View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0759_low_100 (Length: 251)
Name: NF0759_low_100
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_low_100 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 37575758 - 37575529
Alignment:
| Q |
22 |
catcatcaacaaaccgatcttcacatgacagcccaagccccaccattgatattcttgtcatgtcacccaaaaggttaacctataccttttatattccttt |
121 |
Q |
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| T |
37575758 |
catcatcaacaaaccgatcttcacatgacagcccaagccccaccattgatattcttgtcatgtcgcccaaaaggttaacctataccttttatattccttt |
37575659 |
T |
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| Q |
122 |
ggtcagagaatctttagcttcaaaaatctgcatataaatctaataatttacttgttgtatatagagtccaaatcttatgtattatcagtaaagtgaaagg |
221 |
Q |
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| T |
37575658 |
ggtcagagaatctttagcttcaaaaatctgcatataaatctaataatttacttgttgtatatagagtccaaatcttatgtattatcagtaaagtgaaagg |
37575559 |
T |
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| Q |
222 |
agtcagcaacgtcaaagtgcttggcaagtt |
251 |
Q |
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| T |
37575558 |
agtcagcaacgtcaaagtgcttggcaagtt |
37575529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 43 - 248
Target Start/End: Complemental strand, 37582493 - 37582289
Alignment:
| Q |
43 |
cacatgacagcccaagccccaccattgatattcttgtcatgtcacccaaaaggttaacctataccttttatattcctttggtcagagaatctttagcttc |
142 |
Q |
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||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||| ||||||||||||||||| |
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| T |
37582493 |
cacatgacaaaccatgccccacaattgatattcttgtcatgtcacccaaaatgttaacccatacattttatattcctttgaccagagaatctttagcttt |
37582394 |
T |
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| Q |
143 |
aaaaatctgcatataaatctaataatttacttgttgtatatagagtccaaatcttatgtattatcagtaaagtgaaaggagtcagcaacgtcaaagtgct |
242 |
Q |
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| T |
37582393 |
gaaagcctgcatataaatctaacaatttacttattgtctatagagtccaaatc-tatgtagtatcagtaaagtgaaaggagacagcaacgtcaaagtgcc |
37582295 |
T |
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| Q |
243 |
tggcaa |
248 |
Q |
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|||||| |
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| T |
37582294 |
tggcaa |
37582289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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