View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0759_low_105 (Length: 248)
Name: NF0759_low_105
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_low_105 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 22 - 248
Target Start/End: Original strand, 8296706 - 8296932
Alignment:
| Q |
22 |
catcaagaaaaaacttcagaatataacagacatagttttacatacttcaaactttgaaaatgagtgacaggaaactagacatagttataaaaccaaccta |
121 |
Q |
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| T |
8296706 |
catcaagaaaaattttcagaatataacagacatagttttacatacttcaaacattgaagatgagtgacaggaaaccagacatagttataaaaccaaccta |
8296805 |
T |
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| Q |
122 |
attcattttctatataaacaaaaataaaaaccaccctacttcatgtttataagatgaaccgaaactttttcagctccctcaataagtaccatacaggaca |
221 |
Q |
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| T |
8296806 |
attcattttctatataaacaaaaataaaaaccaccctacttcatgtttataagatgaaccgaaactttttcagctccctgaataagtaccatacaggaca |
8296905 |
T |
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| Q |
222 |
tgaaattagcaatgcagaggttaacac |
248 |
Q |
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| T |
8296906 |
tgaaattagcaatgcagaggttaacac |
8296932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 248
Target Start/End: Original strand, 8300283 - 8300509
Alignment:
| Q |
22 |
catcaagaaaaaacttcagaatataacagacatagttttacatacttcaaactttgaaaatgagtgacaggaaactagacatagttataaaaccaaccta |
121 |
Q |
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|||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8300283 |
catcaagagaaatttttagaatataacagacatagttttacatacttcaaacattgaaaatgagtgacaggaaaccagacatagttataaaaccaaccta |
8300382 |
T |
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| Q |
122 |
attcattttctatataaacaaaaataaaaaccaccctacttcatgtttataagatgaaccgaaactttttcagctccctcaataagtaccatacaggaca |
221 |
Q |
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| T |
8300383 |
attcattttctatataaacaaaaataaaaaccaccctacttcatgtttataagatgaaccgaaactttttcagctccctgaataattaccatacaggaca |
8300482 |
T |
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| Q |
222 |
tgaaattagcaatgcagaggttaacac |
248 |
Q |
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| T |
8300483 |
tggaattaggaatgcagaggttaacac |
8300509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 18279782 - 18279718
Alignment:
| Q |
183 |
aaactttttcagctccctcaataagtaccatacaggacatgaaattagcaatgcagaggttaaca |
247 |
Q |
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| T |
18279782 |
aaactttttcagatccctgaataagtaccatacaggacatgaaattagctatgcagaggttaaca |
18279718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 18279963 - 18279889
Alignment:
| Q |
22 |
catcaagaaaaaacttcagaatataacagacatagttttacatacttcaaactttgaaaatgagtgacaggaaac |
96 |
Q |
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|||||||| ||| |||||||| |||||||||||||||| |||||||||||||||||| |||| ||||||||| |
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| T |
18279963 |
catcaagagaaattttcagaatttaacagacatagttttgcatacttcaaactttgaagttgaggcacaggaaac |
18279889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 8300523 - 8300571
Alignment:
| Q |
36 |
ttcagaatataacagacatagttttacatacttcaaactttgaaaatga |
84 |
Q |
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| T |
8300523 |
ttcagaatattaaagacagagtttttcattcttcaaactttgaaaatga |
8300571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 1145074 - 1145132
Alignment:
| Q |
186 |
ctttttcagctccctcaataagtaccatacaggacatgaaattagcaatgcagaggtta |
244 |
Q |
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| T |
1145074 |
cttttgcacctccctgaataattaccatacaagacatgaaattagcaaagcagaggtta |
1145132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 178
Target Start/End: Complemental strand, 21121004 - 21120969
Alignment:
| Q |
143 |
aaataaaaaccaccctacttcatgtttataagatga |
178 |
Q |
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| T |
21121004 |
aaataaaaaccagcctacttcatgtttataagatga |
21120969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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