View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0759_low_110 (Length: 228)
Name: NF0759_low_110
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_low_110 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 5768246 - 5768473
Alignment:
| Q |
1 |
tcatcactcttcgcatgatcattgcttaagttattgtgtaatgcaagttttaacctgtattgtctttcattgctttgcccttaattactttcatcgatta |
100 |
Q |
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| T |
5768246 |
tcatcactcttcgcatgataattgcttaagttattgtgtaatgcaagttttaacctgtattgtctttcattgctttgcctttaattactttcatcgatta |
5768345 |
T |
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| Q |
101 |
ccattcttgtgtcatacatactcggatgatttcttatactatgactcgtaaaatggacatttgaaatcgcggacatcattgtccgaattaaactaattca |
200 |
Q |
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| T |
5768346 |
ccattcttgtgtcatacatactcggatgatttcttatactatgacttgtaaaatggacatttgaaatcgcggacatcattgtccgaattgaactaattca |
5768445 |
T |
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| Q |
201 |
ttgaccactatattctgtagatatttat |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
5768446 |
ttgaccactatattctgtagatatttat |
5768473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 14002591 - 14002454
Alignment:
| Q |
1 |
tcatcactcttcgcatgatcattgcttaagttattgtgtaatgcaagttttaacctgtattgtctttcattgctttgcccttaattactttcatcgatta |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14002591 |
tcatcactcttcgcatgataattgcttaagttattgtgtaatgcaagttttaacctgtattgtctttcattgctttgcctttaattactttcatcgatta |
14002492 |
T |
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| Q |
101 |
ccattcttgtgtcatacatactcggatgatttcttata |
138 |
Q |
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| T |
14002491 |
ccattcttgtgtcatacatactcggataatttcttata |
14002454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 109 - 215
Target Start/End: Complemental strand, 14002453 - 14002347
Alignment:
| Q |
109 |
gtgtcatacatactcggatgatttcttatactatgactcgtaaaatggacatttgaaatcgcggacatcattgtccgaattaaactaattcattgaccac |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14002453 |
gtgtcatacatactcggatgatttcttatactatgactcgtaaaatggacatttgaaatcgcggacatcattgtccgaattgaactaattcattgaccac |
14002354 |
T |
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| Q |
209 |
tatattc |
215 |
Q |
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||||||| |
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| T |
14002353 |
tatattc |
14002347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 8446483 - 8446546
Alignment:
| Q |
13 |
gcatgatcattgcttaagttattgtgtaatgcaagttttaacctgtattgtctttcattgcttt |
76 |
Q |
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||||||| |||||||||||| |||||||| |||||||||||| ||| ||| |||||||||||| |
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| T |
8446483 |
gcatgataattgcttaagtttttgtgtaacgcaagttttaacttgttttgcttttcattgcttt |
8446546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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