View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0759_low_115 (Length: 222)
Name: NF0759_low_115
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_low_115 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 6315269 - 6315146
Alignment:
| Q |
1 |
tctactatatgcctcgtgttaatctccaaattctaagtattttgctgctttttcttttgccatttcaaaacaacagggaactaaatagcttgttggattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6315269 |
tctactatatgcctcgtgttaatctccaaattctaagtattttgctgctttttcttttgccatttcaaaacaacagggaactaaatagcttgttggattg |
6315170 |
T |
|
| Q |
101 |
ttgccaggcatattccaaagctgc |
124 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
6315169 |
ttgccaggcatattccaaagctgc |
6315146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 41863763 - 41863871
Alignment:
| Q |
116 |
caaagctgccaacaggaaaaccaacaccagcagcagcagcatagctcaattggacacaaggttactgacttgttcgga---ggagggcgccacaatcgcc |
212 |
Q |
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||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
41863763 |
caaagctgccaacagaaaaaccaccaccaccagcagcagcatagctcaattggacgcaaggttactgacttgttcggacttggagggcaccacaatcgcc |
41863862 |
T |
|
| Q |
213 |
acgccaatg |
221 |
Q |
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||||||||| |
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| T |
41863863 |
acgccaatg |
41863871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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