View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0759_low_14 (Length: 478)

Name: NF0759_low_14
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0759_low_14
NF0759_low_14
[»] chr6 (2 HSPs)
chr6 (270-454)||(7462018-7462203)
chr6 (59-217)||(7462259-7462435)
[»] chr1 (2 HSPs)
chr1 (270-454)||(46032406-46032591)
chr1 (174-217)||(46032664-46032707)
[»] chr7 (1 HSPs)
chr7 (270-432)||(33447587-33447750)
[»] chr3 (1 HSPs)
chr3 (270-351)||(4484991-4485072)
[»] chr2 (1 HSPs)
chr2 (352-451)||(18016750-18016852)
[»] chr4 (1 HSPs)
chr4 (381-434)||(20472860-20472913)
[»] chr8 (1 HSPs)
chr8 (393-451)||(26109495-26109555)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 270 - 454
Target Start/End: Complemental strand, 7462203 - 7462018
Alignment:
Q  270 atattcgttatttggattggaacttaattttttcagctaaagattgaatctttgagatttttctgatattgggtttctgtttttattggatt-ttttcat 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7462203 atattcgttatttggattggaacttaattttttcagctaaagattgaatctttgagatttttctgatattgggtttctgtttttattggatttttttcat 7462104  T
Q  369 tgtctcggatagtaaattttccccctttttatagcgtttgttcttgtgatttccatgcttgcatgcatagaaatagaatcatgatg 454  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7462103 tgtctcggatagtaaatttttcccctttttatagcgtttgttcttgtgatttccatgcttgcatgcatagaaatagaatcatgatg 7462018  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 59 - 217
Target Start/End: Complemental strand, 7462435 - 7462259
Alignment:
Q  59 ccattcttttggtttctctggaatcgttgctgccttttaaatcgatgctgcctgcaactgccttatcgccgtcgcgtctgccttatc------gccacct 152  Q
    |||||| ||||| |||||| |||||| ||||||||||| |||||||| |||||||| || ||||||||||| |||  || |||||||      ||| ||     
T  7462435 ccattcctttggcttctcttgaatcgctgctgccttttgaatcgatgttgcctgcagctaccttatcgccgccgccgctaccttatcaccgtcgccgccg 7462336  T
Q  153 ccgccgtatcaggtttgaaccctctct------------tttttggttcctcagatggcacggtttaccccctcagg 217  Q
    |||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||    
T  7462335 ccgccgtatcaggtttgaaccctctctctttccctctcttttttggttcctcagatggcacggtttaccccctcagg 7462259  T

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Target: chr1 (Bit Score: 158; Significance: 7e-84; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 270 - 454
Target Start/End: Complemental strand, 46032591 - 46032406
Alignment:
Q  270 atattcgttatttggattggaacttaattttttcagctaaagattgaatctttgagatttttctgatattgggtttctgtttttattggatt-ttttcat 368  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  46032591 atattcgttatttggattggaacttgattttttcagctaaagattgaatctttgagatttttctgatattgagtttctgtttttattggatttttttcat 46032492  T
Q  369 tgtctcggatagtaaattttccccctttttatagcgtttgttcttgtgatttccatgcttgcatgcatagaaatagaatcatgatg 454  Q
    |||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46032491 tgtctcagatagtaattttcccccctttttatagcgtttgttcttgtgatttccatgcttgcatgcatagaaatagaatcatgatg 46032406  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 46032707 - 46032664
Alignment:
Q  174 ctctcttttttggttcctcagatggcacggtttaccccctcagg 217  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  46032707 ctctcttttttggttcctcagatggcacagtttaccccctcagg 46032664  T

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Target: chr7 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 270 - 432
Target Start/End: Original strand, 33447587 - 33447750
Alignment:
Q  270 atattcgttatttggattggaacttaattttttcagctaaagattgaatctttgagatttttctgatattgggtttctgtttttattgga-ttttttcat 368  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33447587 atattcgttatttggattggaacttcattttttcagctaaagattgaatctttgagatttttctgatattgggtttctgtttttattggatttttttcat 33447686  T
Q  369 tgtctcggatagtaaattttccccctttttatagcgtttgttcttgtgatttccatgcttgcat 432  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  33447687 tgtctcagatagtaaatttttcccctttttatagcgtttgttcttgttatttccatgcttgcat 33447750  T

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Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 270 - 351
Target Start/End: Complemental strand, 4485072 - 4484991
Alignment:
Q  270 atattcgttatttggattggaacttaattttttcagctaaagattgaatctttgagatttttctgatattgggtttctgttt 351  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  4485072 atattcgttatttggattgaaacttcattttttcagctaaagattgaatctttgagatttttctgttattgggtttttgttt 4484991  T

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Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 352 - 451
Target Start/End: Complemental strand, 18016852 - 18016750
Alignment:
Q  352 ttattggatttttt-cattgtctcggatagtaaattttccccctttttatagcgtttgttcttgtgatttccatgcttgca----tgcatagaaatagaa 446  Q
    |||||||||||||| |||||||||  ||| |||||||| ||||||||||  | ||||||||||||||||||||||||||||    |||||||||||||||    
T  18016852 ttattggatttttttcattgtctcatataataaatttttccccttttta--gtgtttgttcttgtgatttccatgcttgcatgcttgcatagaaatagaa 18016755  T
Q  447 tcatg 451  Q
    |||||    
T  18016754 tcatg 18016750  T

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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 381 - 434
Target Start/End: Original strand, 20472860 - 20472913
Alignment:
Q  381 taaattttccccctttttatagcgtttgttcttgtgatttccatgcttgcatgc 434  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  20472860 taaatttttcccctttttatagtgtttgttcttgtgatttccatgcttgcatgc 20472913  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 451
Target Start/End: Complemental strand, 26109555 - 26109495
Alignment:
Q  393 ctttttatagcgtttgttcttgtgatttccatgcttgcat--gcatagaaatagaatcatg 451  Q
    |||||||||| ||||||||| |||||||||||||||||||    |||||||||||||||||    
T  26109555 ctttttatagtgtttgttctagtgatttccatgcttgcatagaaatagaaatagaatcatg 26109495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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