View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0759_low_21 (Length: 414)
Name: NF0759_low_21
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 72 - 385
Target Start/End: Original strand, 56471816 - 56472122
Alignment:
| Q |
72 |
atcaatacatactcgtagtcaagactttcaatttgacaaacatcggctccaacaatggcaacctgggaggtagtattgagcctgttgttattcttcacaa |
171 |
Q |
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| T |
56471816 |
atcaatacatactcgtagtcaagactttcaatttgacaaacattggctccaacaatggcaacctgggaggtagtattgagcctgttgttattcttcacaa |
56471915 |
T |
|
| Q |
172 |
ggagaggctctctcaacgtcaacccaccaccagatgaagatcttgatgatattattattctatcttcctccttacccatatgctccacgtcccttccatc |
271 |
Q |
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| T |
56471916 |
ggagaggctctctcaacgtcaacccgcca---gatgaagatcttgatgatattattattctatcttcctccttacccatatgctccacgtcccttccatc |
56472012 |
T |
|
| Q |
272 |
gtcttccatttccatatttcgcctcctatcttatcacaataataattattaccaatcatctatctatcaactaacaaagataattacctcacaaattaag |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
56472013 |
gtcttccatttccatatttcgcctcctatcttatcacaataataattattaccaatc----atctatcaactaacaaagataattacctcacaaattaag |
56472108 |
T |
|
| Q |
372 |
aaagaattgtttgg |
385 |
Q |
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|||||||||||||| |
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| T |
56472109 |
aaagaattgtttgg |
56472122 |
T |
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