View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0759_low_22 (Length: 413)

Name: NF0759_low_22
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0759_low_22
NF0759_low_22
[»] chr2 (3 HSPs)
chr2 (8-403)||(32208855-32209247)
chr2 (8-231)||(12753344-12753560)
chr2 (239-402)||(12753150-12753305)
[»] chr6 (1 HSPs)
chr6 (111-371)||(30146077-30146330)
[»] chr4 (3 HSPs)
chr4 (210-402)||(23148551-23148740)
chr4 (138-390)||(42457726-42457985)
chr4 (274-390)||(902755-902869)
[»] chr8 (4 HSPs)
chr8 (108-403)||(37341134-37341440)
chr8 (67-208)||(14088850-14088990)
chr8 (108-153)||(25200493-25200538)
chr8 (329-381)||(14089182-14089234)
[»] chr3 (5 HSPs)
chr3 (41-188)||(27989679-27989827)
chr3 (10-140)||(7959094-7959222)
chr3 (188-403)||(27990326-27990535)
chr3 (8-89)||(26124239-26124319)
chr3 (41-82)||(26168821-26168862)
[»] chr5 (6 HSPs)
chr5 (267-403)||(17220469-17220603)
chr5 (275-403)||(43451892-43452018)
chr5 (90-203)||(43451676-43451792)
chr5 (315-403)||(29599093-29599181)
chr5 (87-202)||(17220249-17220368)
chr5 (327-375)||(35335455-35335503)
[»] chr7 (1 HSPs)
chr7 (267-403)||(28245653-28245787)
[»] chr1 (1 HSPs)
chr1 (327-403)||(10886942-10887018)


Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 403
Target Start/End: Complemental strand, 32209247 - 32208855
Alignment:
Q  8 cagcacagagacagacttgattgttttgggctaaaacatgcatttggcgcattagattacttcaaaacgacataatcatgcatttgaccatatgttcaag 107  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32209247 cagcacagagacagacttgactgttttgggctaaaacatgcatttgacgcattagattacttcaaaacgacataatcatgcatttgaccatatgttcaag 32209148  T
Q  108 cagaaaatataattcaaaacaacaatgaacaacacaacataatttttcaaaacataatattactcgaacataaaaataaaattatccaaatgttacctca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32209147 cagaaaatataattcaaaacaacaatgaacaacacaacataatttttcaaaacataatattactcgaacataaaaataaaattatccaaatgttacctca 32209048  T
Q  208 ccaattattcaaacataacataatnnnnnnnttaaaattatccaatgactacacccgtcccaccttcaacattatgcctacggcgataaacctttccacc 307  Q
    ||||||||||||| || |||||||       ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  32209047 ccaattattcaaatatcacataat-aaaaaattaaaattatccaatgactacacccgtgccaccttcaacattatgcctacgacgataaacctttccacc 32208949  T
Q  308 ataaacctctctctcgagacatcctccaaatgttgtcatgcctcagacccttgtggcaccacaccactggacataacaacatatatatggtctctg 403  Q
    ||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32208948 ataaac--ctctctcgagacatcctccaaatattgtcatgcctcagacccttgtggcaccacaccactggacataacaacatatatatggtctctg 32208855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 12753560 - 12753344
Alignment:
Q  8 cagcacagagacagacttgattgttttgggctaaaacatgcatttggcgcattagattacttcaaaacgacataatcatgcatttgaccatatgttcaag 107  Q
    |||||||||||||  ||||| || |||||  | |||||||||||||||||||| |||| | || ||||||||||| |||||||||||||||||||||||     
T  12753560 cagcacagagacattcttgactggtttggt-tgaaacatgcatttggcgcattggattgcctctaaacgacataaccatgcatttgaccatatgttcaaa 12753462  T
Q  108 cagaaaatataattcaaaacaacaatgaacaacacaacataatttttcaaaacataatattactcgaacataaaaataaaattatccaaatgttacctca 207  Q
    |||||||| |||||||||||| |||| |||||||||| |||||||| |||||||||| |||| || || ||||||||||     || ||||||||| |||    
T  12753461 cagaaaatttaattcaaaacagcaattaacaacacaatataatttt-caaaacataaaattaatcaaaaataaaaataa-----tcgaaatgttacatca 12753368  T
Q  208 ccaattattcaaacataacataat 231  Q
    |||| |||||||||||||||||||    
T  12753367 ccaaatattcaaacataacataat 12753344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 239 - 402
Target Start/End: Complemental strand, 12753305 - 12753150
Alignment:
Q  239 ttaaaattatccaatgactacacccgtcccaccttcaacattatgcctacggcgataaacctttccaccataaacctctctctcgagacatcctccaaat 338  Q
    ||||||||||||||||| ||||||  | ||||| ||||||||| |||||      |||||||| || |||| ||||||||||   |||| ||||| |||     
T  12753305 ttaaaattatccaatgattacacctctgccaccctcaacattacgccta------taaaccttccctccatgaacctctctca--agacttcctcaaaac 12753214  T
Q  339 gttgtcatgcctcagacccttgtggcaccacaccactggacataacaacatatatatggtctct 402  Q
      || ||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||    
T  12753213 aatgacatgcctcagacctttgcggcaccacaccactggacataacaacatatacatggtctct 12753150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 111 - 371
Target Start/End: Complemental strand, 30146330 - 30146077
Alignment:
Q  111 aaaatataattcaaaacaacaatgaacaacacaacataatttttcaaaacataatattactcgaacataaaaataaaattatccaaatgttacctcacca 210  Q
    ||||| |||||||||| |||||| | ||||| | |||||||||   |||||||| |||| || ||||||||||||||||| || ||||||||| |||| |    
T  30146330 aaaatttaattcaaaataacaatta-caacagagcataattttc--aaacataacattaatcaaacataaaaataaaattttcgaaatgttacatcacta 30146234  T
Q  211 attattcaaacataacataatnnnnnnnttaaaattatccaatgactacacccgtcccaccttcaacattatgcctacggcgataaacctttccaccata 310  Q
    | |||||||||||||||| ||       ||||||||||||||||||||||||| | |||||  ||| |||||||||||||||||||||||| ||||||||    
T  30146233 aatattcaaacataacattattaaaaa-ttaaaattatccaatgactacaccc-tgccacccacaatattatgcctacggcgataaaccttgccaccata 30146136  T
Q  311 aacctctctctcgagacatcctccaaatgttgtcatgcctcagacccttgtggcaccacac 371  Q
    ||||||  |||| |||| |||||||||||||| ||||| |||||||||||  |||||||||    
T  30146135 aacctc--tctcaagacttcctccaaatgttgccatgcttcagacccttggagcaccacac 30146077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 210 - 402
Target Start/End: Original strand, 23148551 - 23148740
Alignment:
Q  210 aattattcaaacataacataatnnnnnnnttaaaattatccaatgactacacccgtcccaccttcaacattatgcctacggcgataaacctttccaccat 309  Q
    ||||||||||||||||||||||       ||| ||| ||||||||||||||||| | ||||| | ||||||||||||||||||||||||||| |||||||    
T  23148551 aattattcaaacataacataattaaaaa-ttacaatcatccaatgactacacccctgccaccctgaacattatgcctacggcgataaaccttcccaccat 23148649  T
Q  310 aaacctctctctcgagacatcctccaaatgttgtcatgcctcagacccttgtggcaccacaccactggacataacaacatatatatggtctct 402  Q
    |||||| ||||  ||||| |||||||||||||||||| ||||| ||||||| ||||||||||||||| |||| |||||||| | |||||||||    
T  23148650 aaacctttctc--gagacttcctccaaatgttgtcattcctcatacccttgcggcaccacaccactgaacatcacaacatacacatggtctct 23148740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 138 - 390
Target Start/End: Original strand, 42457726 - 42457985
Alignment:
Q  138 aacacaacataatttttcaaaacataatattactcgaacataaaaataaaattatccaaatgttacctcaccaa------------ttattcaaacataa 225  Q
    ||||||||||||||||   || ||||| |||| || |||||||||||||||||||||||||||||| |||| ||            |||||||||||||     
T  42457726 aacacaacataattttc--aagcataacattaatcaaacataaaaataaaattatccaaatgttacatcactaaaaattatccaaattattcaaacatat 42457823  T
Q  226 cataatnnnnnnnttaaaattatccaatgactacacccgtcccaccttcaacattatgcctacggcgataaacctttccaccataaacctctctctcgag 325  Q
    ||||||       ||| ||| |||||||||||  |||| | ||||| | |||||||| |||||| |||||||||||||||||||||||  ||||||| ||    
T  42457824 cataattaaaaa-ttacaataatccaatgactctacccctgccaccctaaacattattcctacgacgataaacctttccaccataaac--ctctctcaag 42457920  T
Q  326 acatcctccaaatgttgtcatgcctcagacccttgtggcaccacaccactggacataacaacata 390  Q
    || |||||||||||||  ||||||||||||||||| | |||||||| |||| |||| ||||||||    
T  42457921 acttcctccaaatgtttccatgcctcagacccttgcgacaccacactactgtacatcacaacata 42457985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 390
Target Start/End: Complemental strand, 902869 - 902755
Alignment:
Q  274 caacattatgcctacggcgataaacctttccaccataaacctctctctcgagacatcctccaaatgttgtcatgcctcagacccttgtggcaccacacca 373  Q
    |||||||| ||||||| ||||||||||| |||||||  ||||| |||   |||  ||||||||||| |  ||||||| |||||||||  ||||| |||||    
T  902869 caacattaagcctacgtcgataaaccttcccaccatgcacctccctca--agatttcctccaaatgattccatgccttagacccttgctgcacctcacca 902772  T
Q  374 ctggacataacaacata 390  Q
    |||| ||||||||||||    
T  902771 ctggtcataacaacata 902755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 108 - 403
Target Start/End: Complemental strand, 37341440 - 37341134
Alignment:
Q  108 cagaaaatataattcaaaacaacaatgaacaacacaacataatttttcaaaacataatattactcgaacataaaaataaaattatccaaatgttacctca 207  Q
    |||||||| |||||||||| | |||| || |||||| |||||||||   |||||||| |||| || |||||||||||||||||||||||||||||| |||    
T  37341440 cagaaaatttaattcaaaatagcaattaagaacacatcataattttc--aaacataacattaatcaaacataaaaataaaattatccaaatgttacatca 37341343  T
Q  208 ccaattattcaaacataacataatnnnnnnnttaaaattatccaatgactacacccgtcccaccttc-----------------aacattatgcctacgg 290  Q
    | || |||||||||||||||||||       ||||||||||| |||||| |||||| | ||||| ||                 |||||||||||||||     
T  37341342 ctaaatattcaaacataacataattaaaaa-ttaaaattatctaatgac-acacccctgccaccctcccacctcagccacccttaacattatgcctacga 37341245  T
Q  291 cgataaacctttccaccataaacctctctctcgagacatcctccaaatgttgtcatgcctcagacccttgtggcaccacaccactggacataacaacata 390  Q
    ||||||||||| ||||||||||||||||||   |||| |||||||||| ||| |||| |||| ||||||| | ||||||||||||||||||||||| |||    
T  37341244 cgataaaccttcccaccataaacctctctca--agacttcctccaaattttgccatgtctcatacccttgcgacaccacaccactggacataacaaaata 37341147  T
Q  391 tatatggtctctg 403  Q
    || ||| ||||||    
T  37341146 tacatgatctctg 37341134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 208
Target Start/End: Original strand, 14088850 - 14088990
Alignment:
Q  67 cttcaaaacgacataatcatgcatttgaccatatgttcaagcagaaaatataattcaaaaca--acaatgaacaacacaacataatttttcaaaacataa 164  Q
    |||| |||||||||| |||||| ||||| |||||| || | | |||||| ||||||| ||||  ||||| | |||||||||||||||||  ||  |||||    
T  14088850 cttctaaacgacata-tcatgcctttgatcatatgctccaacggaaaatctaattcataacataacaattatcaacacaacataattttcgaa--cataa 14088946  T
Q  165 tattactcgaacataaaaataaaattatccaaatgttacctcac 208  Q
     |||| || || ||||  ||||||||||||||||||||| ||||    
T  14088947 cattaatcaaatataaccataaaattatccaaatgttacatcac 14088990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 25200538 - 25200493
Alignment:
Q  108 cagaaaatataattcaaaacaacaatgaacaacacaacataatttt 153  Q
    |||||||| ||||||||||||||||| || ||||||||||||||||    
T  25200538 cagaaaatttaattcaaaacaacaattaagaacacaacataatttt 25200493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 14089182 - 14089234
Alignment:
Q  329 tcctccaaatgttgtcatgcctcagacccttgtggcaccacaccactggacat 381  Q
    |||||||||||||| ||| | ||||||||| | |||||| |||||||||||||    
T  14089182 tcctccaaatgttgccattcttcagaccctcgcggcaccgcaccactggacat 14089234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 41 - 188
Target Start/End: Original strand, 27989679 - 27989827
Alignment:
Q  41 aaacatgcatttggcg--cattagattacttcaaaacgacataatcatgcatttgaccatatgttcaagcagaaaatataattcaaaacaacaatgaaca 138  Q
    ||||||||||||||||  ||||||||| |||| |||||||||||  |||||||||||||||||||||| || ||||| ||||| ||||||||||| ||||    
T  27989679 aaacatgcatttggcgtgcattagattgcttctaaacgacataacaatgcatttgaccatatgttcaaacaaaaaatttaatttaaaacaacaattaaca 27989778  T
Q  139 acacaacataatttttcaaaacataatattactcgaacataaaaataaaa 188  Q
    |||||| |||| |||||||||||||| |||| |  || ||||||||||||    
T  27989779 acacaaaataa-ttttcaaaacataacattaataaaatataaaaataaaa 27989827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 7959222 - 7959094
Alignment:
Q  10 gcacagagacagacttgattgttttgggctaaaacatgcatttggcgcattagattacttcaaaacgacataatcatgcatttgaccatatgttcaagca 109  Q
    ||||||||||| || |||||||||||| || ||||||||||||| ||||||||||| |||| ||||||||||| |||||| |||||||||  ||||| ||    
T  7959222 gcacagagacatacatgattgttttgg-ctgaaacatgcatttgtcgcattagattgcttctaaacgacataaccatgca-ttgaccatacattcaaaca 7959125  T
Q  110 gaaaatataattcaaaacaacaatgaacaac 140  Q
     ||||| |||||| |||||||||| ||||||    
T  7959124 aaaaatttaattccaaacaacaattaacaac 7959094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 188 - 403
Target Start/End: Original strand, 27990326 - 27990535
Alignment:
Q  188 attatccaaatgttacctcaccaattattcaaacataacataatnnnnnnnttaaaattatccaatgactacacccgtcccaccttcaacattatgccta 287  Q
    |||||||||| | ||| ||||||| |||||||||||||||| ||       | |||||||| |||||| ||||||| | |||||   ||||||| |||||    
T  27990326 attatccaaaagctacatcaccaaatattcaaacataacatgataaaaaa-taaaaattatacaatgattacacccctgccacc---aacattacgccta 27990421  T
Q  288 cggcgataaacctttccaccataaacctctctctcgagacatcctccaaatgttgtcatgcctcagacccttgtggcaccacaccactggacataacaac 387  Q
    |  ||||||||||||||  ||||||||||||||   |||| |||||||||||    ||  ||||||||| || |||||||||||||| |||||||||  |    
T  27990422 caacgataaacctttcctgcataaacctctctca--agacttcctccaaatgacaccaatcctcagacctttctggcaccacaccacaggacataactgc 27990519  T
Q  388 atatatatggtctctg 403  Q
    ||||| ||||||||||    
T  27990520 atatacatggtctctg 27990535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 26124319 - 26124239
Alignment:
Q  8 cagcacagagacagacttgattgttttgggctaaaacatgcatttggcgcattagattacttcaaaacgacataatcatgca 89  Q
    |||||||| ||||||||||| ||||||||  | ||||||||||||||||||||||||| |||| ||||||||||| ||||||    
T  26124319 cagcacagcgacagacttgactgttttgga-tgaaacatgcatttggcgcattagattgcttctaaacgacataaccatgca 26124239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 26168862 - 26168821
Alignment:
Q  41 aaacatgcatttggcgcattagattacttcaaaacgacataa 82  Q
    ||||||||||||||||||||||||| |||| |||||||||||    
T  26168862 aaacatgcatttggcgcattagatttcttctaaacgacataa 26168821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 267 - 403
Target Start/End: Original strand, 17220469 - 17220603
Alignment:
Q  267 ccaccttcaacattatgcctacggcgataaacctttccaccataaacctctctctcgagacatcctccaaatgttgtcatgcctcagacccttgtggcac 366  Q
    ||||| |||||||  |||||||| || |||||||| |||||||  |||||||||   | || ||||||||||||||| |||||||||||||||   ||||    
T  17220469 ccaccctcaacatgttgcctacgacggtaaaccttcccaccatgcacctctctca--atacttcctccaaatgttgtaatgcctcagacccttcctgcac 17220566  T
Q  367 cacaccactggacataacaacatatatatggtctctg 403  Q
    | |||||||||||||||||||||| ||||||||||||    
T  17220567 ctcaccactggacataacaacatacatatggtctctg 17220603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 275 - 403
Target Start/End: Original strand, 43451892 - 43452018
Alignment:
Q  275 aacattatgcctacggcgataaacctttccaccataaacctctctctcgagacatcctccaaatgttgtcatgcctcagacccttgtggcaccacaccac 374  Q
    |||||| |||||||| || ||||||||  |||| ||||  |||||||  | || |||||||||||||||| |||| ||||||||||  ||||| ||||||    
T  43451892 aacattttgcctacgacggtaaaccttctcaccgtaaa--tctctctaaatacttcctccaaatgttgtcgtgccacagacccttgctgcacctcaccac 43451989  T
Q  375 tggacataacaacatatatatggtctctg 403  Q
    |||||||||||||||| | ||||||||||    
T  43451990 tggacataacaacatacacatggtctctg 43452018  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 203
Target Start/End: Original strand, 43451676 - 43451792
Alignment:
Q  90 tttgaccatatgttcaagcagaaaatataattcaaaaca--acaatgaacaacacaacataatttttcaaaacat---aatattactcgaacataaaaat 184  Q
    ||||||||||||||||| ||||||||  |||||| ||||  ||||| |||||||||||||||||||   ||||||   || |||| || |||||||||||    
T  43451676 tttgaccatatgttcaaacagaaaattgaattcataacataacaataaacaacacaacataattttc--aaacatgcaaacattaatcaaacataaaaat 43451773  T
Q  185 aaaattatccaaatgttac 203  Q
    |||||||||||||||||||    
T  43451774 aaaattatccaaatgttac 43451792  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 403
Target Start/End: Complemental strand, 29599181 - 29599093
Alignment:
Q  315 tctctctcgagacatcctccaaatgttgtcatgcctcagacccttgtggcaccacaccactggacataacaacatatatatggtctctg 403  Q
    |||||||| | || |||| ||||||||||||| ||||| || |||| ||||||||| ||||| | ||||||||||||| ||||||||||    
T  29599181 tctctctcaatacttccttcaaatgttgtcattcctcatactcttgcggcaccacatcactgcatataacaacatatacatggtctctg 29599093  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 202
Target Start/End: Original strand, 17220249 - 17220368
Alignment:
Q  87 gcatttgaccatatgttcaagcagaaaatataattcaaaaca--acaatgaacaacacaacataatttttcaaaacat---aatattactcgaacataaa 181  Q
    |||||||||||||||||||| ||||||||  |||| | ||||  ||||| |||||||||||||||||||   ||||||   || |||| || ||||||||    
T  17220249 gcatttgaccatatgttcaaacagaaaattgaatttataacataacaattaacaacacaacataattttc--aaacattcaaacattaatcaaacataaa 17220346  T
Q  182 aat-aaaattatccaaatgtta 202  Q
    ||| ||||||||||||||||||    
T  17220347 aattaaaattatccaaatgtta 17220368  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 35335503 - 35335455
Alignment:
Q  327 catcctccaaatgttgtcatgcctcagacccttgtggcaccacaccact 375  Q
    |||||||||||||||||||| |||||| |||||  ||||||| ||||||    
T  35335503 catcctccaaatgttgtcattcctcagtccctttcggcaccagaccact 35335455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 267 - 403
Target Start/End: Complemental strand, 28245787 - 28245653
Alignment:
Q  267 ccaccttcaacattatgcctacggcgataaacctttccaccataaacctctctctcgagacatcctccaaatgttgtcatgcctcagacccttgtggcac 366  Q
    ||||| ||||||||| ||||||||||||||||||| |||| ||  ||||||||    |||  ||||||||||| |  |||||||||||||||||| ||||    
T  28245787 ccaccctcaacattaagcctacggcgataaaccttcccactatgcacctctctta--agatttcctccaaatgattccatgcctcagacccttgttgcac 28245690  T
Q  367 cacaccactggacataacaacatatatatggtctctg 403  Q
    | ||||||| | ||||||| |||| | ||||||||||    
T  28245689 ctcaccactagtcataacagcatacacatggtctctg 28245653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 403
Target Start/End: Complemental strand, 10887018 - 10886942
Alignment:
Q  327 catcctccaaatgttgtcatgcctcagacccttgtggcaccacaccactggacataacaacatatatatggtctctg 403  Q
    ||||||||||||| |||||| |||||| |||||  ||||||| ||||||   ||| |||||||| || |||||||||    
T  10887018 catcctccaaatgctgtcattcctcagtccctttcggcaccagaccacttctcatcacaacatagatgtggtctctg 10886942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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