View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0759_low_23 (Length: 411)

Name: NF0759_low_23
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0759_low_23
NF0759_low_23
[»] chr5 (2 HSPs)
chr5 (29-198)||(23086955-23087124)
chr5 (249-408)||(23087136-23087298)
[»] chr6 (3 HSPs)
chr6 (29-171)||(19746422-19746564)
chr6 (49-180)||(5979241-5979372)
chr6 (48-171)||(34861623-34861746)
[»] chr3 (1 HSPs)
chr3 (49-189)||(36340329-36340469)
[»] chr7 (2 HSPs)
chr7 (284-349)||(24022785-24022849)
chr7 (123-168)||(22524938-22524983)
[»] chr8 (2 HSPs)
chr8 (270-320)||(11338232-11338281)
chr8 (270-330)||(11356785-11356844)
[»] scaffold0097 (1 HSPs)
scaffold0097 (126-167)||(16131-16172)
[»] chr2 (1 HSPs)
chr2 (126-167)||(20712292-20712333)


Alignment Details
Target: chr5 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 29 - 198
Target Start/End: Original strand, 23086955 - 23087124
Alignment:
Q  29 aattctgaagatgaccgggcaattatctataatcggagagacgagagagtagaaagaattagaatttccaacaaactgtgttggttttcttccatggatt 128  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||| |||||||||||||||||||||||||||| |||||||||    
T  23086955 aattctgaagatgaccgggcaattatctataatcggagagatgagcgagtagagagaattaaaatttccaacaaactgtgttggttttctgccatggatt 23087054  T
Q  129 atgtggaaagcttggtttcgacttgttggaagtaagttctcttataccatttacaagttttaaagtttac 198  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  23087055 atgttgaaagcttggtttcgacttgttggaagtaagttctcttattccatttacaagttttaaaatttac 23087124  T

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Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 249 - 408
Target Start/End: Original strand, 23087136 - 23087298
Alignment:
Q  249 tgttttgttgtttaattgtaagttttatgttttgctgttttacttctagactaatggatatttcttgaattacagatctgcaaatctgactccaagcaca 348  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23087136 tgttttgttgtttaattgtaagttttatgttttgctgtattacttctagactaatggatatttcttgaattacagatctgcaaatctgactccaagcaca 23087235  T
Q  349 tactccgtacacgcaagtatg---gtatatgatgataatgaaattggagatattgttggagat 408  Q
    |||||||||||||||||||||   ||| ||||||||||||||||||||||||| |||||||||    
T  23087236 tactccgtacacgcaagtatggtagtagatgatgataatgaaattggagatatagttggagat 23087298  T

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Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 29 - 171
Target Start/End: Complemental strand, 19746564 - 19746422
Alignment:
Q  29 aattctgaagatgaccgggcaattatctataatcggagagacgagagagtagaaagaattagaatttccaacaaactgtgttggttttcttccatggatt 128  Q
    |||| |||||||||||| |||||||||||||||| ||||||  |||||||||| ||| ||| |||||||| ||||||||||||||||||| | ||||| |    
T  19746564 aattatgaagatgaccgagcaattatctataatctgagagataagagagtagagagagttaaaatttccagcaaactgtgttggttttctgcaatggact 19746465  T
Q  129 atgtggaaagcttggtttcgacttgttggaagtaagttctctt 171  Q
    |||  ||||||||| ||||||||  ||||||||||||||||||    
T  19746464 atgctgaaagcttgatttcgactcattggaagtaagttctctt 19746422  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 49 - 180
Target Start/End: Original strand, 5979241 - 5979372
Alignment:
Q  49 aattatctataatcggagagacgagagagtagaaagaattagaatttccaacaaactgtgttggttttcttccatggattatgtggaaagcttggtttcg 148  Q
    |||||||||||||||||||||  |||||||||| |||||| |||||||||||||| |  ||||||| ||  |||| |||||  | |||||||||||||||    
T  5979241 aattatctataatcggagagataagagagtagagagaattggaatttccaacaaaataagttggttctccgccattgattacattgaaagcttggtttcg 5979340  T
Q  149 acttgttggaagtaagttctcttataccattt 180  Q
    |||  |||||||||||||||||| || |||||    
T  5979341 actcattggaagtaagttctcttctatcattt 5979372  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 171
Target Start/End: Complemental strand, 34861746 - 34861623
Alignment:
Q  48 caattatctataatcggagagacgagagagtagaaagaattagaatttccaacaaactgtgttggttttcttccatggattatgtggaaagcttggtttc 147  Q
    ||||||||||||||  ||| ||  |||||||||| |||  ||||||||||||| || |   |||||| ||| |||||||||| || |||||||| ||| |    
T  34861746 caattatctataataagagggataagagagtagatagagctagaatttccaacgaaattcattggttctctgccatggattacgttgaaagcttagttcc 34861647  T
Q  148 gacttgttggaagtaagttctctt 171  Q
    ||||  ||||||||||||||||||    
T  34861646 gactccttggaagtaagttctctt 34861623  T

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Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 49 - 189
Target Start/End: Original strand, 36340329 - 36340469
Alignment:
Q  49 aattatctataatcggagagacgagagagtagaaagaattagaatttccaacaaactgtgttggttttcttccatggattatgtggaaagcttggtttcg 148  Q
    |||||| ||||||| ||||||  |||||||||| | || ||||||||||||| || | || ||||  ||| || | |||||||| |||||||||||||||    
T  36340329 aattatatataatcagagagataagagagtagagaaaactagaatttccaacgaaatatgctggtcctctgcctttgattatgttgaaagcttggtttcg 36340428  T
Q  149 acttgttggaagtaagttctcttataccatttacaagtttt 189  Q
    ||  ||||||||||||||||||| ||  |||||||| ||||    
T  36340429 acacgttggaagtaagttctcttctaagatttacaattttt 36340469  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 349
Target Start/End: Original strand, 24022785 - 24022849
Alignment:
Q  284 tgttttacttctagactaatggatatttcttgaattacagatctgcaaatctgactccaagcacat 349  Q
    |||||||||||||||||||||||||||| |||||||| || |||||||  |  |||||||||||||    
T  24022785 tgttttacttctagactaatggatattt-ttgaattataggtctgcaagaccaactccaagcacat 24022849  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 22524983 - 22524938
Alignment:
Q  123 tggattatgtggaaagcttggtttcgacttgttggaagtaagttct 168  Q
    |||||||||| |||||||||||||| |||| ||| |||||||||||    
T  22524983 tggattatgttgaaagcttggtttcaacttcttgaaagtaagttct 22524938  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 11338281 - 11338232
Alignment:
Q  270 gttttatgttttgctgttttacttctagactaatggatatttcttgaatta 320  Q
    ||||||||||||| |||||||||||||| || |||||||||| ||||||||    
T  11338281 gttttatgttttgttgttttacttctagtcttatggatattt-ttgaatta 11338232  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 330
Target Start/End: Complemental strand, 11356844 - 11356785
Alignment:
Q  270 gttttatgttttgctgttttacttctagactaatggatatttcttgaattacagatctgca 330  Q
    ||||||||||||| |||||||||||||  ||||| ||||||| |||||||| || ||||||    
T  11356844 gttttatgttttgttgttttacttctaacctaattgatattt-ttgaattataggtctgca 11356785  T

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Target: scaffold0097 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 16172 - 16131
Alignment:
Q  126 attatgtggaaagcttggtttcgacttgttggaagtaagttc 167  Q
    ||||||| |||||||||||||| |||||||| ||||||||||    
T  16172 attatgtcgaaagcttggtttcaacttgttgaaagtaagttc 16131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 20712333 - 20712292
Alignment:
Q  126 attatgtggaaagcttggtttcgacttgttggaagtaagttc 167  Q
    ||||||| |||||||||||||| |||||||| ||||||||||    
T  20712333 attatgtcgaaagcttggtttcaacttgttgaaagtaagttc 20712292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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