View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0759_low_37 (Length: 386)
Name: NF0759_low_37
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_low_37 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 9e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 173 - 360
Target Start/End: Original strand, 47862970 - 47863158
Alignment:
| Q |
173 |
acacccaatttcgcggaactttaagcataacaacaacaacacagccgatctagaaaagtttaattttt-tccatattgaacaaatttttaacgtgaaaat |
271 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47862970 |
acacccaatttcgcggaactttaagcataagagcaacaacacagtcgatctagaaaattttaatttttatccatattgaacaaatttttaacgtgaaaat |
47863069 |
T |
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| Q |
272 |
aaaagaacaaatttttgggtttggattaaatttatgagattaaaaagatgaagagaaaagaaaaggacaaagattttgggttgggttga |
360 |
Q |
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| T |
47863070 |
aaaagaacaaatttttgggtttggattaaatttatgagattaaaaagatgaagagaaaagaaaagaacaaagattttgggttgggttga |
47863158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 156; Significance: 9e-83; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 170 - 354
Target Start/End: Complemental strand, 3517 - 3331
Alignment:
| Q |
170 |
ttcacacccaatttcgcggaactttaagcataacaacaacaacacagccgatctagaaaagtttaattttttccatat--tgaacaaatttttaacgtga |
267 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
3517 |
ttcacacccaattttgcggaactttaagcataacaacaacaacacagccgatctagaaaagtttaattttttttttatactgaacaaatttttaacgtga |
3418 |
T |
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| Q |
268 |
aaataaaagaacaaatttttgggtttggattaaatttatgagattaaaaagatgaagagaaaagaaaaggacaaagattttgggttg |
354 |
Q |
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| T |
3417 |
aaataaaagaacaaatttttgggtttggattaaatttatgagattaaaaagatgaagagaaaagaaaagaacaaagattttgggttg |
3331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 170 - 360
Target Start/End: Original strand, 24303608 - 24303797
Alignment:
| Q |
170 |
ttcacacccaatttcgcggaactttaagcataacaacaacaacacagccgatctagaaaagtttaatttt--ttccatattgaacaaatttttaacgtga |
267 |
Q |
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| T |
24303608 |
ttcacactcaattttgcggaactttaagcataacaacaaca---cagccgatctagaaaattttaattttttttccatattgaacaaatttttaacgtga |
24303704 |
T |
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| Q |
268 |
aaataaaagaacaaatttttgggtttggattaaatttatgagattaaaaagatgaagagaaaagaaaaggacaaagattttgggttgggttga |
360 |
Q |
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| T |
24303705 |
caataaaagaataaatttttgggtttggattaaatttatgagattaaaaagatgaagagaaaagaaaagaacaaagattttgggttgggttga |
24303797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 170 - 354
Target Start/End: Complemental strand, 40463024 - 40462841
Alignment:
| Q |
170 |
ttcacacccaatttcgcggaactttaagcataacaacaacaacacagccgatctagaaaagtttaattttttccatat--tgaacaaatttttaacgtga |
267 |
Q |
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| T |
40463024 |
ttcacacccaatttcgcggaactttcagcataacaacaaca---cagccgatctagaaaagtttaattttttttttatactgaacaaatttttaacgtga |
40462928 |
T |
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| Q |
268 |
aaataaaagaacaaatttttgggtttggattaaatttatgagattaaaaagatgaagagaaaagaaaaggacaaagattttgggttg |
354 |
Q |
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| T |
40462927 |
aaataaaagaacaaatttttgggtttggattaaatttatgagattaaaaagatgaagagaaaagaaaagaacaaagattttgggttg |
40462841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 277 - 360
Target Start/End: Original strand, 11150995 - 11151078
Alignment:
| Q |
277 |
aacaaatttttgggtttggattaaatttatgagattaaaaagatgaagagaaaagaaaaggacaaagattttgggttgggttga |
360 |
Q |
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| T |
11150995 |
aacaaatttttggatttggattaaatttatgagattaaaaagatgaagagaaaagaaaagaacaaagattttgggttgggttga |
11151078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 170 - 260
Target Start/End: Original strand, 11150913 - 11151005
Alignment:
| Q |
170 |
ttcacacccaatttcgcggaactttaagcataacaacaacaacacagccgatctagaaaagtttaa---ttttttccatattgaacaaattttt |
260 |
Q |
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| T |
11150913 |
ttcacacccaatttcgcagaactt-aagcataacaacaacaacacagccgatctagaaaattttaatttttttttccatattcaacaaattttt |
11151005 |
T |
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