View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0759_low_4 (Length: 566)
Name: NF0759_low_4
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 31 - 436
Target Start/End: Complemental strand, 7809178 - 7808770
Alignment:
| Q |
31 |
gtcttccgcgcattcttctccgccgaacccctcacaccggaacccgatcctcaacccgaacattcagacgcaaccttcgacagttctcactatgaactcc |
130 |
Q |
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| T |
7809178 |
gtcttccgcgctttcttctccgccgaacccctcacaccggaacccgatcctcaacccgaacattcagacgcaaccttcgatagttctcactacgaaatcc |
7809079 |
T |
|
| Q |
131 |
caattctcaacaacaacgacgaaaagccgaaggtgacgtggaataagaaataccgagaccggacggataaacttgtgttcggcgatgagccgaaggggag |
230 |
Q |
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|||| || ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7809078 |
caatccttaacaacaacgacgaaaagccgaaggtgtcgtggaataagaaatatcgagaccggacggataaactggtgttcggcgatgagccgaaggggag |
7808979 |
T |
|
| Q |
231 |
agtgaagtttaaggaggaagaggaagagaggaaaacaaaggcgcttgagaaagctttgttggaagctgcgttgagtaaaccggaggagg---aggaagaa |
327 |
Q |
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| | |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||| ||| |
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| T |
7808978 |
aataaagtttaaggaggaagaggaggagaggaaaacaaaggcgcttgagaaggctttgttggaagctgcgttgagtaaacccgaggaggaggaggaggaa |
7808879 |
T |
|
| Q |
328 |
gaagatgaagatgtcggtgttgtggaagaggaagatcagaagtctttgtctgtcgggattattggtgctcctaatgctggcaaatcttctctcactaatt |
427 |
Q |
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|||||||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
7808878 |
gaagatgaagatgtcggtgttgtgaatgaggaggatcagaagtctttgtctgttgggattattggtgctcctaatgctggaaaatcttctctcactaact |
7808779 |
T |
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| Q |
428 |
atatggtga |
436 |
Q |
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| T |
7808778 |
acatggtga |
7808770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 31 - 436
Target Start/End: Original strand, 8552165 - 8552561
Alignment:
| Q |
31 |
gtcttccgcgcattcttctccgccgaacccctcacaccggaacccgatcctcaacccgaacattcagacgcaaccttcgacagttctcactatgaactcc |
130 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||| ||| |
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| T |
8552165 |
gtcttccgcgctttcttctccgccgaacccctcacaccggaacc------------cgaacattcagacgcaaccttcgatagttctcactacgaaatcc |
8552252 |
T |
|
| Q |
131 |
caattctcaacaacaacgacgaaaagccgaaggtgacgtggaataagaaataccgagaccggacggataaacttgtgttcggcgatgagccgaaggggag |
230 |
Q |
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|||| || || ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
8552253 |
caatccttaataacaacgacgaaaagccgaaggtgacgtggaataagaaatatcgagaccgaacggataaactggtgttcggcgatgagccgaaggggag |
8552352 |
T |
|
| Q |
231 |
agtgaagtttaaggaggaagaggaagagaggaaaacaaaggcgcttgagaaagctttgttggaagctgcgttgagtaaacc---ggaggaggaggaagaa |
327 |
Q |
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| | |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
8552353 |
aataaagtttaaggaggaagaggaggagaggaaaacaaaggcgcttgagaaggctttgttggaagctgcgttgagtaaacccgaggaggaggaggaggaa |
8552452 |
T |
|
| Q |
328 |
gaagatgaagatgtcggtgttgtggaagaggaagatcagaagtctttgtctgtcgggattattggtgctcctaatgctggcaaatcttctctcactaatt |
427 |
Q |
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|||||||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
8552453 |
gaagatgaagatgtcggtgttgtgaatgaggaggatcagaagtctttgtctgttgggattattggtgctcctaatgctggaaaatcttctctcactaact |
8552552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 6e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 31 - 218
Target Start/End: Complemental strand, 11942171 - 11941984
Alignment:
| Q |
31 |
gtcttccgcgcattcttctccgccgaacccctcacaccggaacccgatcctcaacccgaacattcagacgcaaccttcgacagttctcactatgaactcc |
130 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11942171 |
gtcttccgcgctttcttctccgccgaacccctcacaccggaacccgatcctcaacccgaacattcagacgcaaccttcgacagttcgcactatgaactcc |
11942072 |
T |
|
| Q |
131 |
caattctcaacaacaacgacgaaaagccgaaggtgacgtggaataagaaataccgagaccggacggataaacttgtgttcggcgatga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11942071 |
caattctcaacaacaacgacgaaaagccgaaggtgacgtggaataagaaataccgagaccggacggataaacttgtgttcggcgatga |
11941984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 484
Target Start/End: Complemental strand, 11941946 - 11941908
Alignment:
| Q |
446 |
gtttgtttctttcgtttcaataatgatgttatgttatgt |
484 |
Q |
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||||||||||||| ||||| ||||||||||||||||||| |
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| T |
11941946 |
gtttgtttctttcatttcagtaatgatgttatgttatgt |
11941908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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