View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0759_low_42 (Length: 360)
Name: NF0759_low_42
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_low_42 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 97 - 288
Target Start/End: Original strand, 32837095 - 32837278
Alignment:
| Q |
97 |
gtatacaggttaatccaattaagaacgcttgacnnnnnnnaattgtaaggacgttagattgtgattattattccctaagtttgtgctatgcaaaaatgct |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32837095 |
gtatacaggttaatccaattaagaacgcttgactttttttaattgtaaggacgttagattgtgattattattccctaagtttgtgctatgcaaaaatgct |
32837194 |
T |
|
| Q |
197 |
ctaagcttgtgatttacttttgtgctagggaaatgaaagcgcttttactctagaaagcttgtggaagctggttaaacaactttgttttattt |
288 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
32837195 |
ttgagcttgtgatttacatttgtgctagggaaatgaaaacgcttttactctagaaa--------aagctggttaaacaattttgttttattt |
32837278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 156 - 334
Target Start/End: Original strand, 32826448 - 32826627
Alignment:
| Q |
156 |
tgtgattattattccctaagtttgtgctatgcaaaaatgctctaagcttgtgatttact-tttgtgctagggaaatgaaagcgcttttactctagaaagc |
254 |
Q |
| |
|
|||||||||||| | |||| ||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
32826448 |
tgtgattattatcctttaagcttgtgctatccaaaaatgccctaagcttgtgatttacactttgtgctagggaaatgaaaacgcttttactctaaaaagc |
32826547 |
T |
|
| Q |
255 |
ttgtggaagctggttaaacaactttgttttatttcttttagtgggacattaagataaaaactttatcatttgttggcttg |
334 |
Q |
| |
|
| || ||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32826548 |
tggttgaagctggtcacacaactttgttttatttcttttagtgagacattaagataaaaactttagcatttgttggcttg |
32826627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 197 - 344
Target Start/End: Original strand, 32847749 - 32847889
Alignment:
| Q |
197 |
ctaagcttgtgatttacttttgtgctagggaaatgaaagcgcttttactctagaaagcttgtggaagctggttaaacaactttgttttatttcttttagt |
296 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32847749 |
ctaagcttgtgatttacagttgttctagggaaatgaaaacgcttttactctagaaagcttgtggaagctggt--------tttgttttatttcttttagt |
32847840 |
T |
|
| Q |
297 |
-gggacattaagataaaaactttatcatttgttggcttgggcacaggtt |
344 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
32847841 |
ggggacattaagacaaaaactttatcatttgttggcttgagcataggtt |
32847889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 197 - 344
Target Start/End: Complemental strand, 17930159 - 17930013
Alignment:
| Q |
197 |
ctaagcttgtgatttacttttgtgctagggaaatgaaagcgcttttactctagaaagcttgtggaagctggttaaacaactttgttttatttcttttagt |
296 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17930159 |
ctaagcttgttatttacatttgttatagggaaatgaaaacg-ttttactctagaaagcttgtggaagctgattaaacaactttgttttatttcttttagt |
17930061 |
T |
|
| Q |
297 |
gggacattaagataaaaactttatcatttgttggcttgggcacaggtt |
344 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||| ||||| |
|
|
| T |
17930060 |
gggacattaagataaaaactttatcattttttggcttgagcataggtt |
17930013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4216 times since January 2019
Visitors: 4829