View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0759_low_45 (Length: 357)
Name: NF0759_low_45
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 45500815 - 45501152
Alignment:
| Q |
1 |
tttcattaaggtgatattgatgattcagtaaactaacaatcaaacaagtccaatttaaatcaaggtaatatatagacctacctgtcggtgctacttatgt |
100 |
Q |
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| T |
45500815 |
tttcattaaggtgatattgatgattcagtaaactaacaatcaaacaagtccaatttaaatcaaggtaatatatagacctacctgtcggtgctacttatgt |
45500914 |
T |
|
| Q |
101 |
gttccaagcagtggtcgtgcccattcatgtacatatcaacattgttggcctgcaaatttcattttaaaatgagagatgtttatcggtaaataaaggacga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45500915 |
gttccaagcagtggtcgtgcccattcatgtacatatcaacattgttggcctgcaaatttcattttaaaatgagagatgtttatcagtaaataaaggacga |
45501014 |
T |
|
| Q |
201 |
tgcaccttatctttataactagtaggacagtatgagtactagttatatataatgagtgacctcaagaattggcaggaggtgtgttaagagctctttggtg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45501015 |
tgcaccttatctttataactagtaggacagtatgagtgctagttatatataatgagtgacctcaagaattggcaggaggtgtgttaagagctctttggtg |
45501114 |
T |
|
| Q |
301 |
tcgccgtggtgccctatgctactccactggatgatgtcc |
339 |
Q |
| |
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|||||||||||||||||||| || ||||||||||||||| |
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| T |
45501115 |
tcgccgtggtgccctatgcttct-cactggatgatgtcc |
45501152 |
T |
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