View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0759_low_49 (Length: 342)

Name: NF0759_low_49
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0759_low_49
NF0759_low_49
[»] chr4 (2 HSPs)
chr4 (1-251)||(16899456-16899700)
chr4 (1-251)||(18347971-18348215)
[»] chr3 (1 HSPs)
chr3 (1-251)||(13236276-13236520)
[»] chr1 (2 HSPs)
chr1 (30-214)||(6352282-6352464)
chr1 (1-189)||(10404011-10404203)
[»] scaffold1079 (1 HSPs)
scaffold1079 (1-183)||(463-645)
[»] chr2 (1 HSPs)
chr2 (5-155)||(42203278-42203427)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-139)||(197865-198003)
scaffold0002 (4-131)||(256308-256435)
[»] chr5 (1 HSPs)
chr5 (51-177)||(40230907-40231035)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 16899456 - 16899700
Alignment:
Q  1 acaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgattttttcccaataaccgaatacttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16899456 acaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgattttttcccaataaccgaatacttt 16899555  T
Q  101 tgtctgtaaatattgcatattttattccattcataaatctattttcttccctatgagttctagtctcaatacgaatactagttttatttactgttcatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16899556 tgtctgtaaatattgcatattttattccattcataaatctattttcttccctatgagttctagtctcaatacgaatactagttttatttactgttcatat 16899655  T
Q  201 atttaaatttgaatttgaatttaccacaccaattcgttataatggatgatg 251  Q
    |||||      ||||||||||||||||||||||||||||||||||||||||    
T  16899656 attta------aatttgaatttaccacaccaattcgttataatggatgatg 16899700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 18347971 - 18348215
Alignment:
Q  1 acaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgattttttcccaataaccgaatacttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18347971 acaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgattttttcccaataaccgaatacttt 18348070  T
Q  101 tgtctgtaaatattgcatattttattccattcataaatctattttcttccctatgagttctagtctcaatacgaatactagttttatttactgttcatat 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18348071 tgtctgtaaatattgcattttttattccattcataaatctattttcttccctatgagttctagtctcaatacgaatactagttttatttactgttcatat 18348170  T
Q  201 atttaaatttgaatttgaatttaccacaccaattcgttataatggatgatg 251  Q
    |||||      ||||||||||||||||||||||||||||||||||||||||    
T  18348171 attta------aatttgaatttaccacaccaattcgttataatggatgatg 18348215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 13236520 - 13236276
Alignment:
Q  1 acaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgattttttcccaataaccgaatacttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13236520 acaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgattttttcccaataaccgaatacttt 13236421  T
Q  101 tgtctgtaaatattgcatattttattccattcataaatctattttcttccctatgagttctagtctcaatacgaatactagttttatttactgttcatat 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13236420 tgtctgtaaatattgcattttttattccattcataaatctattttcttccctatgagttctagtctcaatacgaatactagttttatttactgttcatat 13236321  T
Q  201 atttaaatttgaatttgaatttaccacaccaattcgttataatggatgatg 251  Q
    ||||||||||||      |||||||||||||||||||||||||||||||||    
T  13236320 atttaaatttga------atttaccacaccaattcgttataatggatgatg 13236276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 30 - 214
Target Start/End: Complemental strand, 6352464 - 6352282
Alignment:
Q  30 tatttctgtcctagttgatcctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattcca 129  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  6352464 tatttctgtcctagttgatcct-attcgacattaaaagtatattgattttttcccaataat-gaatacttttgtctgtaaatattacatattttattcca 6352367  T
Q  130 ttcataaatctattttcttccctatgagttctagtctcaatacgaatactagttttatttactgttcatatatttaaatttgaat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  6352366 ttcataaatctattttcttccctatgagttctagtctcaatacgaatactagttttatttactattcatatattaaaatttgaat 6352282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 10404011 - 10404203
Alignment:
Q  1 acaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgatt----cgacattaaaagtatattgattttttcccaataaccgaata 96  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    |||||||||||||||||||||||||||||||||||||||||    
T  10404011 acaccaaataagagttcgacccaatgttttatttctgtcctagttgatactgattaattcgacattaaaagtatattgattttttcccaataaccgaata 10404110  T
Q  97 cttttgtctgtaaatattgcatattttattccattcataaatctattttcttccctatgagttctagtctcaatacgaatactagttttattt 189  Q
    ||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  10404111 cttttgtttgtaaatattatatattttattccattcataaatctattttcttccctatgatttctagtctcaataccaatactagttttattt 10404203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1079 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold1079
Description:

Target: scaffold1079; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 463 - 645
Alignment:
Q  1 acaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgattttttcccaataaccgaatacttt 100  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||| ||||||||||||||    
T  463 acaccaaagaagagttcgacccaatgctttatttctgtcctagttgatcctgattcgacattagaagtatattgatttttcaccactaaccgaatacttt 562  T
Q  101 tgtctgtaaatattgcatattttattccattcataaatctattttcttccctatgagttctagtctcaatacgaatactagtt 183  Q
    ||||||||| || |  |||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| |||| ||||||    
T  563 tgtctgtaactactatatatttgattccatccataaatctattttcttccctatgagttcgagtctcaataagaatgctagtt 645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 5 - 155
Target Start/End: Complemental strand, 42203427 - 42203278
Alignment:
Q  5 caaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtc 104  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||  ||||||||||| |||||||||    
T  42203427 caaagaagagttcgacccaatgttttatttctatcctagttgatcctgattcgacattaaaagtatattgaattttt-acaataaccgaacacttttgtc 42203329  T
Q  105 tgtaaatattgcatattttattccattcataaatctattttcttccctatg 155  Q
    |||||||||||||||| |||||||||||||||||||||||| |||| ||||    
T  42203328 tgtaaatattgcatatattattccattcataaatctatttttttccatatg 42203278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 198003 - 197865
Alignment:
Q  1 acaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgattttttcccaataaccgaatacttt 100  Q
    |||||||| ||||||||||||||||| |||||||||||| ||||  |||| |||||||||||||||||||||||||| ||||||||||| |||| |||||    
T  198003 acaccaaagaagagttcgacccaatgctttatttctgtcttagtgaatcccgattcgacattaaaagtatattgattctttcccaataaacgaagacttt 197904  T
Q  101 tgtctgtaaatattgcatattttattccattcataaatc 139  Q
    | |||||||||| ||| ||||| ||||||| ||||||||    
T  197903 tttctgtaaatactgcgtatttgattccatccataaatc 197865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 256435 - 256308
Alignment:
Q  4 ccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgt 103  Q
    ||||| ||||||| || |||||| |||||||||||| ||||  |||| |||||||||||||||||||||||||| ||||||||||| |||| |||||| |    
T  256435 ccaaagaagagtttgaaccaatgctttatttctgtcttagtgaatcccgattcgacattaaaagtatattgattctttcccaataaacgaagactttttt 256336  T
Q  104 ctgtaaatattgcatattttattccatt 131  Q
    ||||||||| ||| ||||| ||||||||    
T  256335 ctgtaaatactgcgtatttgattccatt 256308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 51 - 177
Target Start/End: Complemental strand, 40231035 - 40230907
Alignment:
Q  51 tgattcgacattaaaagtatattgatttttt-cccaataaccgaatacttttgtctgtaaa-tattgcatattttattccattcataaatctattttctt 148  Q
    ||||||||| |||||||| |||||||||||| |||||||||| ||||||||||||| |||| ||   ||||||| |||  | ||| ||||||||||||||    
T  40231035 tgattcgacgttaaaagtgtattgatttttttcccaataaccaaatacttttgtctataaaataccacatatttcattgaactcacaaatctattttctt 40230936  T
Q  149 ccctatgagttctagtctcaatacgaata 177  Q
    ||| ||||||||||||||||||| |||||    
T  40230935 cccgatgagttctagtctcaataagaata 40230907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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