View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0759_low_56 (Length: 320)

Name: NF0759_low_56
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0759_low_56
NF0759_low_56
[»] chr6 (4 HSPs)
chr6 (24-149)||(15729205-15729330)
chr6 (252-291)||(15729033-15729072)
chr6 (251-291)||(5077646-5077686)
chr6 (145-181)||(15729143-15729179)
[»] chr7 (4 HSPs)
chr7 (24-134)||(11344976-11345084)
chr7 (250-287)||(11344810-11344847)
chr7 (145-181)||(11344916-11344952)
chr7 (251-291)||(45455187-45455227)
[»] chr1 (1 HSPs)
chr1 (251-291)||(44276424-44276464)
[»] chr8 (1 HSPs)
chr8 (251-291)||(26697606-26697646)
[»] chr4 (1 HSPs)
chr4 (251-283)||(42871405-42871437)
[»] chr3 (3 HSPs)
chr3 (251-291)||(20336430-20336470)
chr3 (251-290)||(20314538-20314577)
chr3 (254-291)||(20287987-20288024)


Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 15729330 - 15729205
Alignment:
Q  24 ttttccccaaattttgatcaaacgagatgaagaattagagctagcaggtgtggttccatggggtttttcgaacaatggtaaaatcaaagagattttatcc 123  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15729330 tttttcccaaatgttgatcaaacgagatgaagaattagagctagcaggtgtggttccatggggtttttcgaacaatggtaaaatcaaagagattttatcc 15729231  T
Q  124 caaattgctcacaacaccaaattgtt 149  Q
    ||||||||||||| || |||||||||    
T  15729230 caaattgctcacagcagcaaattgtt 15729205  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 291
Target Start/End: Complemental strand, 15729072 - 15729033
Alignment:
Q  252 atgaagattgatgatgaagatgatatgttgatcaaggaag 291  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15729072 atgaagattgatgatgaagatgatatgttgatcaaggaag 15729033  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 5077646 - 5077686
Alignment:
Q  251 tatgaagattgatgatgaagatgatatgttgatcaaggaag 291  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  5077646 tatgaagattgatgatgaagatgatatgttgatgaaggaag 5077686  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 15729179 - 15729143
Alignment:
Q  145 ttgttaaggtcgctgttataaatcccaaattaactca 181  Q
    |||||||||||||| ||||||||||||||||||||||    
T  15729179 ttgttaaggtcgctattataaatcccaaattaactca 15729143  T

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Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 24 - 134
Target Start/End: Complemental strand, 11345084 - 11344976
Alignment:
Q  24 ttttccccaaattttgatcaaacgagatgaagaattagagctagcaggtgtggttccatggggtttttcgaacaatggtaaaatcaaagagattttatcc 123  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  11345084 ttttccccaaattttaatcaaacgagatgaagaat-agagctagcaggtgtggtttcatggggtttttcgaacaatggtaaaatcaaagaga-tttatcc 11344987  T
Q  124 caaattgctca 134  Q
    |||||||||||    
T  11344986 caaattgctca 11344976  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 11344847 - 11344810
Alignment:
Q  250 ctatgaagattgatgatgaagatgatatgttgatcaag 287  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11344847 ctatgaagattgatgatgaagatgatatgttgatcaag 11344810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 11344952 - 11344916
Alignment:
Q  145 ttgttaaggtcgctgttataaatcccaaattaactca 181  Q
    ||||||||||||||||||||||||| |||||||||||    
T  11344952 ttgttaaggtcgctgttataaatcctaaattaactca 11344916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 45455187 - 45455227
Alignment:
Q  251 tatgaagattgatgatgaagatgatatgttgatcaaggaag 291  Q
    ||||||||||||||||||||||||||| ||||| |||||||    
T  45455187 tatgaagattgatgatgaagatgatatattgatgaaggaag 45455227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 44276464 - 44276424
Alignment:
Q  251 tatgaagattgatgatgaagatgatatgttgatcaaggaag 291  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  44276464 tatgaagattgatgatgaagatgatatgttgatgaaggaag 44276424  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 26697606 - 26697646
Alignment:
Q  251 tatgaagattgatgatgaagatgatatgttgatcaaggaag 291  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  26697606 tatgaagattgatgatgaagttgatatgttgatgaaggaag 26697646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 283
Target Start/End: Complemental strand, 42871437 - 42871405
Alignment:
Q  251 tatgaagattgatgatgaagatgatatgttgat 283  Q
    |||||||||||||||||||||||||||||||||    
T  42871437 tatgaagattgatgatgaagatgatatgttgat 42871405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 20336430 - 20336470
Alignment:
Q  251 tatgaagattgatgatgaagatgatatgttgatcaaggaag 291  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  20336430 tatgaagattgatgatgaagatggtatgttgatgaaggaag 20336470  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 290
Target Start/End: Original strand, 20314538 - 20314577
Alignment:
Q  251 tatgaagattgatgatgaagatgatatgttgatcaaggaa 290  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  20314538 tatgaagattgatgatgaagatggtatgttgatgaaggaa 20314577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 291
Target Start/End: Original strand, 20287987 - 20288024
Alignment:
Q  254 gaagattgatgatgaagatgatatgttgatcaaggaag 291  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  20287987 gaagattgatgatgaagatggtatgttgatgaaggaag 20288024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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