View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0759_low_63 (Length: 307)
Name: NF0759_low_63
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_low_63 |
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| [»] scaffold0728 (1 HSPs) |
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Alignment Details
Target: scaffold0728 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 2701 - 2491
Alignment:
| Q |
1 |
atgaaacatgagagcaagagagtaatgttttatagttcagaaattgaaatggaaatggaaatgtaccaaaatttcaggggaatttatatgcnnnnnnnnt |
100 |
Q |
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| T |
2701 |
atgaaacatgagagcaagagagtaatgttttatagttcagaaattgaaatggaaatggaaatgtaccaaaatttcaggggaatttatatgcaaaaaaaat |
2602 |
T |
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| Q |
101 |
tggaatgttgaaatagaaatactgctgagtcaatgtgaagtcatttgagtcagtgtgacatgtagtgcttgtgccaatgattggaatgttcaaggacatg |
200 |
Q |
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| T |
2601 |
tggaatgatgaaatagaaatactgctgagtcaatgtgaagtcatttgagtcagtgtgacatgtagtgcgtgtgccaatgattggaatgttcaaggacatg |
2502 |
T |
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| Q |
201 |
agtcacttgtg |
211 |
Q |
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||||||||||| |
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| T |
2501 |
agtcacttgtg |
2491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 19407135 - 19406925
Alignment:
| Q |
1 |
atgaaacatgagagcaagagagtaatgttttatagttcagaaattgaaatggaaatggaaatgtaccaaaatttcaggggaatttatatgcnnnnnnnnt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
19407135 |
atgaaacatgagagcaagagagtaatgttttatagttcagaaattgaaatggaaatggaaatgtaccaaaatttcaggggaatttatatgcaaaaaaaat |
19407036 |
T |
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| Q |
101 |
tggaatgttgaaatagaaatactgctgagtcaatgtgaagtcatttgagtcagtgtgacatgtagtgcttgtgccaatgattggaatgttcaaggacatg |
200 |
Q |
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| T |
19407035 |
tggaatgatgaaatagaaatactgctgagtcaatgtgaagtcatttgagtcagtgtgacatgtagtgcgtgtgccaatgattggaatgttcaaggacatg |
19406936 |
T |
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| Q |
201 |
agtcacttgtg |
211 |
Q |
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| T |
19406935 |
agtcacttgtg |
19406925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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