View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0759_low_68 (Length: 295)

Name: NF0759_low_68
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0759_low_68
NF0759_low_68
[»] chr3 (2 HSPs)
chr3 (30-280)||(290625-290873)
chr3 (140-192)||(8354176-8354228)
[»] chr2 (9 HSPs)
chr2 (85-279)||(24525678-24525872)
chr2 (85-279)||(24532350-24532543)
chr2 (138-192)||(42436450-42436504)
chr2 (140-192)||(1979988-1980040)
chr2 (140-192)||(4789262-4789314)
chr2 (142-190)||(16107393-16107441)
chr2 (145-192)||(106466-106512)
chr2 (162-192)||(16549969-16549999)
chr2 (131-192)||(3829243-3829304)
[»] chr7 (3 HSPs)
chr7 (125-227)||(6015774-6015876)
chr7 (145-227)||(13316515-13316596)
chr7 (147-192)||(17257432-17257476)
[»] chr1 (5 HSPs)
chr1 (125-227)||(12252506-12252608)
chr1 (132-192)||(18172642-18172701)
chr1 (140-227)||(18547889-18547976)
chr1 (142-190)||(2981105-2981153)
chr1 (139-193)||(29101796-29101850)
[»] chr4 (3 HSPs)
chr4 (118-192)||(4442126-4442200)
chr4 (146-212)||(10266447-10266511)
chr4 (146-212)||(10285472-10285536)
[»] chr8 (2 HSPs)
chr8 (119-227)||(11405858-11405965)
chr8 (140-192)||(26588155-26588207)
[»] chr6 (3 HSPs)
chr6 (140-192)||(7732693-7732745)
chr6 (142-190)||(24585721-24585769)
chr6 (140-190)||(5090494-5090544)
[»] chr5 (2 HSPs)
chr5 (140-192)||(14460178-14460230)
chr5 (145-192)||(29286097-29286143)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 30 - 280
Target Start/End: Complemental strand, 290873 - 290625
Alignment:
Q  30 atattgttaatgattgattggtagcatacatacatagtgattgattgctaactacattccatattaaggtgtctacatttttctaattatttttcttaaa 129  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||| |||||||||||||||||||| |||||||||||||||||||    
T  290873 atattgttaatgattgattggtaacatacatacatagtgattgattgctaacta--ttcgatattaaggtgtctacatttctctaattatttttcttaaa 290776  T
Q  130 gataacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccacttaacggaatttctggattc 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||    
T  290775 gataacggtgtcatcattttattggttataaatttatatatttttgtataaatattcatgatatgcaaccttgatcccacttaacgaaatttttggattc 290676  T
Q  230 attgctgactatgttgacagacacattgaaagggccttcacctagacccag 280  Q
     ||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  290675 gttgctaactatgtcgacagacacattgaaagggccttcacctagacccag 290625  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 8354228 - 8354176
Alignment:
Q  140 tcatcattttattggttataaatttatatatttttgtataaatatttatgata 192  Q
    ||||||||||| |||||||   ||||||||||||||| |||||||||||||||    
T  8354228 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgata 8354176  T

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Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 85 - 279
Target Start/End: Complemental strand, 24525872 - 24525678
Alignment:
Q  85 attccatattaaggtgtctacatttttctaattatttttcttaaagataacggtgtcatcattttattggttataaatttatatat-ttttgtataaata 183  Q
    |||| |||||||||||||||||||| |||||||||||| | || | |||| ||||||||||||| ||||||||| ||||||| ||| |||| ||||||||    
T  24525872 attcgatattaaggtgtctacatttctctaattattttgcatagacataatggtgtcatcattt-attggttatgaatttatgtatattttttataaata 24525774  T
Q  184 tttatgatatgcaaccttgatcccacttaacggaatttctggattcattgctgactatgttgacagacacattgaaagggccttcacctagaccca 279  Q
    || |||||  |||||||||||||||||||||  |||||||||||||  |||||| ||||| ||||||||||||||||||||||||||| |||||||    
T  24525773 ttcatgatgagcaaccttgatcccacttaacaaaatttctggattcgatgctgattatgtcgacagacacattgaaagggccttcacccagaccca 24525678  T

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Target: chr2; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 85 - 279
Target Start/End: Complemental strand, 24532543 - 24532350
Alignment:
Q  85 attccatattaaggtgtctacatttttctaattatttttcttaaagataacggtgtcatcattttattggttataaatttatatatttttgtataaatat 184  Q
    |||| |||||||||||||||||||| ||||||| |||| | || | |||| ||||||||||||| ||||||||| ||||||| ||||| |||||||||||    
T  24532543 attcgatattaaggtgtctacatttctctaattgttttgcatagacataatggtgtcatcattt-attggttatgaatttatgtatttctgtataaatat 24532445  T
Q  185 ttatgatatgcaaccttgatcccacttaacggaatttctggattcattgctgactatgttgacagacacattgaaagggccttcacctagaccca 279  Q
    | |||||  |||||||||||||||||||||  |||||||||||||  |||||| ||||| ||||||||||||||||||||||| ||| |||||||    
T  24532444 tcatgatgagcaaccttgatcccacttaacaaaatttctggattcgatgctgattatgtcgacagacacattgaaagggcctttacccagaccca 24532350  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 42436450 - 42436504
Alignment:
Q  138 tgtcatcattttattggttataaatttatatatttttgtataaatatttatgata 192  Q
    ||||||||||||||| |||||||||||| |||||||| || ||||||||||||||    
T  42436450 tgtcatcattttatttgttataaatttacatatttttctagaaatatttatgata 42436504  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 1979988 - 1980040
Alignment:
Q  140 tcatcattttattggttataaatttatatatttttgtataaatatttatgata 192  Q
    ||||||||||| ||||||| | ||||||||||||||| |||||||||||||||    
T  1979988 tcatcattttaatggttatgattttatatatttttgtttaaatatttatgata 1980040  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 4789314 - 4789262
Alignment:
Q  140 tcatcattttattggttataaatttatatatttttgtataaatatttatgata 192  Q
    ||||||||||| |||||||   ||||||||||||||| |||||||||||||||    
T  4789314 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgata 4789262  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 16107441 - 16107393
Alignment:
Q  142 atcattttattggttataaatttatatatttttgtataaatatttatga 190  Q
    ||||||||| |||||||   |||||||||||||||||||||||||||||    
T  16107441 atcattttaatggttatggttttatatatttttgtataaatatttatga 16107393  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 106466 - 106512
Alignment:
Q  145 attttattggttataaatttatatatttttgtataaatatttatgata 192  Q
    |||||||| |||||||||||||||| ||||||||||||||||| ||||    
T  106466 attttattagttataaatttatata-ttttgtataaatatttaagata 106512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 192
Target Start/End: Complemental strand, 16549999 - 16549969
Alignment:
Q  162 tttatatatttttgtataaatatttatgata 192  Q
    |||||||||||||||||||||||||||||||    
T  16549999 tttatatatttttgtataaatatttatgata 16549969  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 3829304 - 3829243
Alignment:
Q  131 ataacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgata 192  Q
    |||| |||||||| |||||||| ||||| |||||| || |||||||| || |||||||||||    
T  3829304 ataatggtgtcataattttatttgttatgaatttaaatgtttttgtaaaactatttatgata 3829243  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 227
Target Start/End: Original strand, 6015774 - 6015876
Alignment:
Q  125 ttaaagataacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccacttaacggaatttctg 224  Q
    |||| ||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||  |||| ||||||||  | ||||||||    
T  6015774 ttaatgataatgatgtcatcgttttattggttataaatttatatatttttgtataaatatttatgataaacaattttgaccccacttattgaaatttctg 6015873  T
Q  225 gat 227  Q
    |||    
T  6015874 gat 6015876  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 13316515 - 13316596
Alignment:
Q  145 attttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccacttaacggaatttctggat 227  Q
    |||||||| ||||||||||| |||| ||||||||||||||||| ||||  |||  |||| ||||||||  | |||||||||||    
T  13316515 attttattagttataaatttgtata-ttttgtataaatatttaagataaacaatattgaccccacttattgaaatttctggat 13316596  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 17257476 - 17257432
Alignment:
Q  147 tttattggttataaatttatatatttttgtataaatatttatgata 192  Q
    |||||| ||||||||||||||||||||| |||||| ||||||||||    
T  17257476 tttattagttataaatttatatattttt-tataaacatttatgata 17257432  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 227
Target Start/End: Original strand, 12252506 - 12252608
Alignment:
Q  125 ttaaagataacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccacttaacggaatttctg 224  Q
    |||| ||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||  |||| ||||||||  | ||||||||    
T  12252506 ttaatgataatgatgtcatcgttttattggttataaatttatatatttttgtataaatatttatgataaacaattttgaccccacttattgaaatttctg 12252605  T
Q  225 gat 227  Q
    |||    
T  12252606 gat 12252608  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 18172642 - 18172701
Alignment:
Q  132 taacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgata 192  Q
    ||||| |||| || |||||||||||||||||||||||| |||||||||||||||| |||||    
T  18172642 taacgatgtcttctttttattggttataaatttatata-ttttgtataaatatttttgata 18172701  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 18547976 - 18547889
Alignment:
Q  140 tcatcattttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccacttaacggaatttctggat 227  Q
    ||||||||||| |||||||   ||||||||||||||| |||||||||||||||  | | ||||| ||||||| | | |||||||||||    
T  18547976 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccactttatgaaatttctggat 18547889  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 2981105 - 2981153
Alignment:
Q  142 atcattttattggttataaatttatatatttttgtataaatatttatga 190  Q
    ||||||||| |||||||   |||||||||||||||||||||||||||||    
T  2981105 atcattttaatggttatggttttatatatttttgtataaatatttatga 2981153  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 29101850 - 29101796
Alignment:
Q  139 gtcatcattttattggttataaatttatatatttttgtataaatatttatgatat 193  Q
    ||||||||||||| | |||||||||||||||| ||| ||| ||||||||| ||||    
T  29101850 gtcatcattttatcgtttataaatttatatatatttttattaatatttataatat 29101796  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 4442200 - 4442126
Alignment:
Q  118 atttttcttaaagataacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgata 192  Q
    ||||||||||| ||||| | || ||| ||||| ||||||||| |||||||| ||||||| |||||||||||||||    
T  4442200 atttttcttaatgataatgatgccattatttttttggttatagatttatatttttttgtttaaatatttatgata 4442126  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 10266511 - 10266447
Alignment:
Q  146 ttttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccactta 212  Q
    |||||||||||||||||||| || |||||  ||||||||||||||||  | | ||||||||||||||    
T  10266511 ttttattggttataaatttaaatgttttt--ataaatatttatgataaacgatcttgatcccactta 10266447  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 10285536 - 10285472
Alignment:
Q  146 ttttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccactta 212  Q
    ||||||||||||| |||||| ||||||||  ||||||||||||||||  | | ||||||||||||||    
T  10285536 ttttattggttatgaatttaaatattttt--ataaatatttatgataaacgatcttgatcccactta 10285472  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 11405858 - 11405965
Alignment:
Q  119 tttttcttaaagataacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccacttaacggaa 218  Q
    ||||| |||| ||||| | ||||||||||||||| |||||||||||| |||||||| || ||||||||| ||||   ||| |||| ||||||||  | ||    
T  11405858 tttttgttaatgataatgatgtcatcattttatttgttataaatttacatattttt-tagaaatatttaagataaataactttgaccccacttattgaaa 11405956  T
Q  219 tttctggat 227  Q
    |||||||||    
T  11405957 tttctggat 11405965  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 26588207 - 26588155
Alignment:
Q  140 tcatcattttattggttataaatttatatatttttgtataaatatttatgata 192  Q
    ||||||||||| ||||||| | ||||||||||||||| |||||||||||||||    
T  26588207 tcatcattttaatggttatgattttatatatttttgtttaaatatttatgata 26588155  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 7732745 - 7732693
Alignment:
Q  140 tcatcattttattggttataaatttatatatttttgtataaatatttatgata 192  Q
    ||||||||||| ||||||| | ||||||||||||||| |||||||||||||||    
T  7732745 tcatcattttaatggttatgattttatatatttttgtttaaatatttatgata 7732693  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 24585769 - 24585721
Alignment:
Q  142 atcattttattggttataaatttatatatttttgtataaatatttatga 190  Q
    ||||||||| |||||||   |||||||||||||||||||||||||||||    
T  24585769 atcattttaatggttatggttttatatatttttgtataaatatttatga 24585721  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 5090544 - 5090494
Alignment:
Q  140 tcatcattttattggttataaatttatatatttttgtataaatatttatga 190  Q
    ||||||||||||| ||||| |||| ||| ||||||||| ||||||||||||    
T  5090544 tcatcattttatttgttatgaattcatagatttttgtaaaaatatttatga 5090494  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 14460230 - 14460178
Alignment:
Q  140 tcatcattttattggttataaatttatatatttttgtataaatatttatgata 192  Q
    ||||||||||| |||||||   ||||||||||||||| |||||||||||||||    
T  14460230 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgata 14460178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 29286143 - 29286097
Alignment:
Q  145 attttattggttataaatttatatatttttgtataaatatttatgata 192  Q
    |||||||| |||||||||||||||| ||||||||||||||||| ||||    
T  29286143 attttattagttataaatttatata-ttttgtataaatatttaagata 29286097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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