View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0759_low_74 (Length: 282)
Name: NF0759_low_74
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_low_74 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 53 - 251
Target Start/End: Complemental strand, 33440123 - 33439923
Alignment:
| Q |
53 |
acatcatcatattattccacatatccatttttaaaatgcgggacttaatgatttagactaataaaagaacgattgtgctctaataagagcacaaattaag |
152 |
Q |
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| T |
33440123 |
acatcaacatattattccacatatccatttttaaaatgcgggacttaatgatttcgactaataaaagaacgattgtgctctaataagagcacaaattaag |
33440024 |
T |
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| Q |
153 |
gagctaaaagaaaaat--aaaagcaatttttacattgaaaagaataatgtttaaatttttaagatattgaatacatattttttaagaaaatgcttctagt |
250 |
Q |
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| T |
33440023 |
gagctaaaaggagaattgaaaagcaatttttacgttgaaaagaataatgtttaaaattttaagatattgaatacatattttttaagaaaatacttctagt |
33439924 |
T |
|
| Q |
251 |
t |
251 |
Q |
| |
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| T |
33439923 |
t |
33439923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 12453876 - 12453963
Alignment:
| Q |
141 |
gcacaaattaaggagctaaaagaa--aaataaaag-caatttttacattgaaaagaataatgtttaaatttttaagatattgaataca |
225 |
Q |
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|||||| |||||||||||||| | || |||||| ||| |||| ||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
12453876 |
gcacaagttaaggagctaaaaaagcgaattaaaagacaagttttgcattgaaaagataaatttttaaatttttaagatattgaataca |
12453963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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