View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0759_low_80 (Length: 276)

Name: NF0759_low_80
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0759_low_80
NF0759_low_80
[»] chr4 (22 HSPs)
chr4 (22-270)||(7907763-7908011)
chr4 (89-266)||(7877231-7877402)
chr4 (88-266)||(7774225-7774397)
chr4 (163-272)||(7904611-7904720)
chr4 (201-266)||(7813097-7813162)
chr4 (201-266)||(7822586-7822651)
chr4 (165-265)||(45366618-45366718)
chr4 (172-272)||(45372447-45372547)
chr4 (201-266)||(7800254-7800319)
chr4 (200-264)||(48156825-48156889)
chr4 (154-266)||(48902520-48902632)
chr4 (201-265)||(49044626-49044690)
chr4 (201-265)||(49048996-49049060)
chr4 (201-272)||(7771021-7771092)
chr4 (156-264)||(48735713-48735821)
chr4 (209-265)||(48898347-48898403)
chr4 (147-258)||(45385191-45385302)
chr4 (207-265)||(48170986-48171044)
chr4 (201-266)||(7238116-7238181)
chr4 (201-264)||(7789706-7789769)
chr4 (172-265)||(48862829-48862922)
chr4 (209-265)||(48148082-48148138)
[»] chr8 (5 HSPs)
chr8 (191-272)||(12199914-12199995)
chr8 (191-272)||(12444342-12444423)
chr8 (201-271)||(15348479-15348549)
chr8 (191-266)||(12194908-12194983)
chr8 (191-266)||(12439336-12439411)
[»] chr3 (3 HSPs)
chr3 (175-272)||(47452297-47452394)
chr3 (201-272)||(11006352-11006423)
chr3 (201-266)||(11024933-11024998)
[»] chr1 (4 HSPs)
chr1 (201-266)||(24340031-24340096)
chr1 (206-266)||(24309799-24309859)
chr1 (201-264)||(24322079-24322142)
chr1 (224-264)||(24366795-24366835)
[»] chr5 (2 HSPs)
chr5 (206-265)||(29712866-29712925)
chr5 (209-258)||(29687676-29687725)
[»] scaffold0508 (1 HSPs)
scaffold0508 (224-266)||(11902-11944)
[»] chr6 (2 HSPs)
chr6 (212-265)||(21980041-21980094)
chr6 (201-265)||(21015393-21015457)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 22 - 270
Target Start/End: Original strand, 7907763 - 7908011
Alignment:
Q  22 catcatcatcatcatcggtttttaaaactctgcttatataagactgatcgagtggtaaattggaaacccttcctgtaaaattaaggtttacaagatggta 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7907763 catcatcatcatcatcggtttttaaaactctgcttatataagactgatcgagtggtaaattggaaacccttcctgtaaaattagggtttacaagatggta 7907862  T
Q  122 gagagctcggaggagaagaagaagaagacgacgacactgccgtatcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||     
T  7907863 gagagctcggaggagaagaagaagaagacgacgacactgccgtatcttcctcatgaattgattttccagatcctactgaggttgccggtgaagtctctta 7907962  T
Q  222 cacgtttcaagtctgtttgtaagtcatggttttctcttatctctgctcc 270  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7907963 cacgtttcaagtctgttcgtaagtcatggttttctcttatctctgctcc 7908011  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 89 - 266
Target Start/End: Original strand, 7877231 - 7877402
Alignment:
Q  89 ccttcctgtaaaattaaggtttacaagatggtagagagctcggaggagaagaagaagaagacgacgacactgccgtatcttcatcatgaattgattttcc 188  Q
    |||||||||||||||| | ||||||||||||||||| ||  |||||||||||||||||||||      || ||||||||||| ||||||||||||| |||    
T  7877231 ccttcctgtaaaattaggatttacaagatggtagagtgcatggaggagaagaagaagaagac------acggccgtatcttcctcatgaattgattatcc 7877324  T
Q  189 agatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctg 266  Q
    | |||||  | ||||||| |||||||||||||  ||||||||| |   ||||||||  ||||||||||||||||||||    
T  7877325 aaatcctgatttggttgctggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatctctg 7877402  T

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Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 88 - 266
Target Start/End: Complemental strand, 7774397 - 7774225
Alignment:
Q  88 cccttcctgtaaaattaaggtttacaagatggtagagagctcggaggagaagaagaagaagacgacgacactgccgtatcttcatcatgaattgattttc 187  Q
    ||||| ||||||||||| |||||||||||||||||||||| || ||||||||||| |||||||      |||||||||||||| ||||||||||||| |     
T  7774397 ccctttctgtaaaattagggtttacaagatggtagagagcacgcaggagaagaagcagaagac------actgccgtatcttcctcatgaattgattatt 7774304  T
Q  188 cagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctg 266  Q
    || ||| |  || || |||||||||||||||||   | |||||| | ||||||||||  ||||||||||||||||||||    
T  7774303 caaatcttgatgcggctgccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatctctg 7774225  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 7904611 - 7904720
Alignment:
Q  163 gtatcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatc 262  Q
    |||||||| || |||||||||| | || ||| |  |||||||||| ||||||||||||  ||||||||| | ||||||||||| ||||||||||||||||    
T  7904611 gtatcttcctcgtgaattgattattcaaatcttgatgtggttgcctgtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttatc 7904710  T
Q  263 tctgctcctc 272  Q
    |||| |||||    
T  7904711 tctgatcctc 7904720  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 7813097 - 7813162
Alignment:
Q  201 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctg 266  Q
    ||||||||||||||| ||||  ||||||||||| ||||||||| ||||||||||||||||||||||    
T  7813097 ggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctg 7813162  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 7822586 - 7822651
Alignment:
Q  201 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctg 266  Q
    ||||||||||||||| ||||  ||||||||||| ||||||||| ||||||||||||||||||||||    
T  7822586 ggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctg 7822651  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 265
Target Start/End: Complemental strand, 45366718 - 45366618
Alignment:
Q  165 atcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctc 264  Q
    |||||| ||||||||||||  |||| ||||||||  |||| || ||||||||||||  |||||||||||  ||||||||||  |||||||||||||||||    
T  45366718 atcttcctcatgaattgatgatccaaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctc 45366619  T
Q  265 t 265  Q
    |    
T  45366618 t 45366618  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 272
Target Start/End: Complemental strand, 45372547 - 45372447
Alignment:
Q  172 tcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctgctcct 271  Q
    ||||||||||||  | || || |||||  ||||||||||||||||||||  ||||||||| | |||||||||||| ||||||||| ||||||||| ||||    
T  45372547 tcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctgatcct 45372448  T
Q  272 c 272  Q
    |    
T  45372447 c 45372447  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 7800254 - 7800319
Alignment:
Q  201 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctg 266  Q
    ||||||||||||||| ||||  ||||||||||| ||||||||| ||||||||||||||| ||||||    
T  7800254 ggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctctg 7800319  T

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Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 48156889 - 48156825
Alignment:
Q  200 tggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctc 264  Q
    ||||| |||||||||||||||  |||||||||||  ||||||||||| |||||||||||||||||    
T  48156889 tggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatctc 48156825  T

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Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 48902520 - 48902632
Alignment:
Q  154 gacactgccgtatcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttt 253  Q
    ||||||||||||||| | ||||||||||||  |||| ||  | | |||||||||||| ||||||||    |||||||| | |||||||||||| ||||||    
T  48902520 gacactgccgtatctacctcatgaattgatcatccaaattttgcagtggttgccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttt 48902619  T
Q  254 tctcttatctctg 266  Q
    |||||||| ||||    
T  48902620 tctcttatatctg 48902632  T

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Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 49044690 - 49044626
Alignment:
Q  201 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctct 265  Q
    ||||||| |||| |||||||  ||||||||||| ||||||||||| |||||||||||||||||||    
T  49044690 ggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctct 49044626  T

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Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 49049060 - 49048996
Alignment:
Q  201 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctct 265  Q
    |||||| ||||| |||||||  ||||||||||| ||||||||||| |||||||||||||||||||    
T  49049060 ggttgctggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctct 49048996  T

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Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 272
Target Start/End: Original strand, 7771021 - 7771092
Alignment:
Q  201 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctgctcctc 272  Q
    ||||||||||||||||||||  | ||||||| |  ||||||||||| ||||||||||||||||||| |||||    
T  7771021 ggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcctc 7771092  T

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Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 264
Target Start/End: Complemental strand, 48735821 - 48735713
Alignment:
Q  156 cactgccgtatcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttc 255  Q
    ||||||||| ||| | |||||| |||||  | || || || ||| |||| |||||||||||||||   |||||||| | |||||||||||| ||||||||    
T  48735821 cactgccgtttctgcctcatgagttgatagttcaaattcttctgaggttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttc 48735722  T
Q  256 tcttatctc 264  Q
    |||||||||    
T  48735721 tcttatctc 48735713  T

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Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 48898347 - 48898403
Alignment:
Q  209 gtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctct 265  Q
    |||||||||||| |||||||||||| |||||||||||| ||||| || |||||||||    
T  48898347 gtgaagtctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctct 48898403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 45385302 - 45385191
Alignment:
Q  147 agacgacgacactgccgtatcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtc 246  Q
    ||||||||||||||||| || | | | ||||||||||  |||| ||||||||  |||| || || ||||||||   ||||||||| || |||||||||||    
T  45385302 agacgacgacactgccgcatatgcctaatgaattgatgatccaaatcctactaaggttaccagttaagtctctcatacgtttcaaatccgtttgtaagtc 45385203  T
Q  247 atggttttctct 258  Q
     |||||||||||    
T  45385202 ttggttttctct 45385191  T

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Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 48171044 - 48170986
Alignment:
Q  207 cggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctct 265  Q
    ||||||||||||||  ||||||||| | |||||||||||| |||||| |||||||||||    
T  48171044 cggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatctct 48170986  T

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Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 7238181 - 7238116
Alignment:
Q  201 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctg 266  Q
    ||||||| ||||||||||||    ||||||| | |||||||||||| |||||||||||||||||||    
T  7238181 ggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttatctctg 7238116  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 7789706 - 7789769
Alignment:
Q  201 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctc 264  Q
    ||||||||||||||||||||  | ||||||| |  ||||||||||| ||||||||| |||||||    
T  7789706 ggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttatctc 7789769  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 265
Target Start/End: Original strand, 48862829 - 48862922
Alignment:
Q  172 tcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctct 265  Q
    ||||||||||||  |||  ||||| ||  |||| |||||||||||||||   |||||||| |  ||||| ||||| ||||||||||||||||||    
T  48862829 tcatgaattgatcatcctaatcctgctaaggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctct 48862922  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 48148138 - 48148082
Alignment:
Q  209 gtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctct 265  Q
    ||||||||||||   |||||||| | ||| |||||||| ||||||||||||||||||    
T  48148138 gtgaagtctcttattcgtttcaaatgtgtctgtaagtcttggttttctcttatctct 48148082  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 12199914 - 12199995
Alignment:
Q  191 atcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctgctcctc 272  Q
    ||||| ||| ||||||||||||||||||||  | ||||||| | |||||||||||||||||||||||||||||||| |||||    
T  12199914 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctc 12199995  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 12444342 - 12444423
Alignment:
Q  191 atcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctgctcctc 272  Q
    ||||| ||| ||||||||||||||||||||  | ||||||| | |||||||||||||||||||||||||||||||| |||||    
T  12444342 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctc 12444423  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 271
Target Start/End: Original strand, 15348479 - 15348549
Alignment:
Q  201 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctgctcct 271  Q
    |||| |||||||||||||||  ||||||||| |  ||||||||||| ||||||||||||||||||| ||||    
T  15348479 ggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcct 15348549  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 266
Target Start/End: Original strand, 12194908 - 12194983
Alignment:
Q  191 atcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctg 266  Q
    ||||| ||| ||||||||||||||||||||  | ||||||| |   |||||||||||||||| |||||||||||||    
T  12194908 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctg 12194983  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 266
Target Start/End: Original strand, 12439336 - 12439411
Alignment:
Q  191 atcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctg 266  Q
    ||||| ||| ||||||||||||||||||||  | ||||||| |   |||||||||||||||| |||||||||||||    
T  12439336 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctg 12439411  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 272
Target Start/End: Complemental strand, 47452394 - 47452297
Alignment:
Q  175 tgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctgctcctc 272  Q
    |||||||||  |||||||| |  || ||||||||||||||||||||| ||| |||||||   ||| |||||||||||||||||||||||||| |||||    
T  47452394 tgaattgataatccagatcttggtgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctc 47452297  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 11006423 - 11006352
Alignment:
Q  201 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctgctcctc 272  Q
    |||||||||||||||| |||  ||||||||||| ||||||||||||||||||  |||||||||||| |||||    
T  11006423 ggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgatcctc 11006352  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 11024998 - 11024933
Alignment:
Q  201 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctg 266  Q
    |||| ||||||||||||||   ||||||||| |  |||||||||||||||||  ||||||||||||    
T  11024998 ggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttatctctg 11024933  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 24340031 - 24340096
Alignment:
Q  201 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctg 266  Q
    |||| ||||| |||||||||   |||||||| ||||||||||||||||||||||| ||||||||||    
T  24340031 ggttaccggttaagtctcttattcgtttcaaatctgtttgtaagtcatggttttcacttatctctg 24340096  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 266
Target Start/End: Original strand, 24309799 - 24309859
Alignment:
Q  206 ccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctctg 266  Q
    ||||| |||||||||   |||||||| || |||||||||| ||||||||||||||||||||    
T  24309799 ccggttaagtctcttattcgtttcaaatccgtttgtaagttatggttttctcttatctctg 24309859  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 24322079 - 24322142
Alignment:
Q  201 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctc 264  Q
    |||||| |||||||||||||   |||||||| |  ||||||||||| |||||||||||||||||    
T  24322079 ggttgctggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 24322142  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 24366795 - 24366835
Alignment:
Q  224 cgtttcaagtctgtttgtaagtcatggttttctcttatctc 264  Q
    |||||||| | |||||| |||||||||||||||||||||||    
T  24366795 cgtttcaaatgtgtttgcaagtcatggttttctcttatctc 24366835  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 29712925 - 29712866
Alignment:
Q  206 ccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctct 265  Q
    |||||||||||||||   ||||||||||  |||||||||| |||||||||||||||||||    
T  29712925 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 29712866  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 29687676 - 29687725
Alignment:
Q  209 gtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctct 258  Q
    ||||||||||||  ||| ||||||| |||||||||||| |||||||||||    
T  29687676 gtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctct 29687725  T

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Target: scaffold0508 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 11902 - 11944
Alignment:
Q  224 cgtttcaagtctgtttgtaagtcatggttttctcttatctctg 266  Q
    |||||||| || |||||||||||||||||||||||||||||||    
T  11902 cgtttcaaatccgtttgtaagtcatggttttctcttatctctg 11944  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 21980094 - 21980041
Alignment:
Q  212 aagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctct 265  Q
    ||||||||  |||||||||||| |||||||||||| ||||||||||| ||||||    
T  21980094 aagtctctctcacgtttcaagtgtgtttgtaagtcttggttttctctcatctct 21980041  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 21015393 - 21015457
Alignment:
Q  201 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctcttatctct 265  Q
    |||| ||||| | |||||||  ||||||||||| ||||||||||| || ||||||||||||||||    
T  21015393 ggttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctcttatctct 21015457  T

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