View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0759_low_81 (Length: 276)
Name: NF0759_low_81
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_low_81 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 51 - 247
Target Start/End: Complemental strand, 44633357 - 44633161
Alignment:
| Q |
51 |
catcaaatgaaaatttgttttcagttcctcttgaacaaatgaaaatcggaaatcatgctcaaaatcgttgatttgcgttgttgaaactgcaaatcgcaaa |
150 |
Q |
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| T |
44633357 |
catcaaatgaaaattcgttttcagttcctcttgaacaaatgaaaatcggaaatcatgctcaaaatcgttgatttgcgttgttgaaactgcaaattgcaaa |
44633258 |
T |
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| Q |
151 |
tcatcttcgagtttttcgtgttcttgttcttattcatgtgttcctcttttgattgggtgctgaaacgtgttccaattctccttcatctgtgctcctc |
247 |
Q |
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| T |
44633257 |
tcatcttcaagtttttcgtgttcttgttcttattcatgtgttcctcttttgattgggtgctgaaacgtgttccaattctccttcatctgtgttcctc |
44633161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 51 - 247
Target Start/End: Complemental strand, 21612329 - 21612132
Alignment:
| Q |
51 |
catcaaatgaaaatttgttttcagttcctcttgaacaaatgaaaatcggaaatcatgctcaaaatcgttgatttgcgttgttgaaactgcaaatcgcaaa |
150 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| |
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| T |
21612329 |
catcaaatgaaaattcgttttcagttcctcttgaacaaatgaaaatcggaaatcatgcttaaaatctttgatttgcgttgttgaaactgcaaatcggaaa |
21612230 |
T |
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| Q |
151 |
tcatcttcgagtttttcgtgttcttgttcttattcatgtgttcctcttttgattgggtgctgaaa-cgtgttccaattctccttcatctgtgctcctc |
247 |
Q |
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| T |
21612229 |
tcatcttcaagtttttcatgttctagttcttattcatgtgttcctcttttgattgggtacttaaatcgtgttccaattctccttcatctgtgttcctc |
21612132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 51 - 247
Target Start/End: Complemental strand, 5659783 - 5659588
Alignment:
| Q |
51 |
catcaaatgaaaatttgttttcagttcctcttgaacaaatgaaaatcggaaatcatgctcaaaatcgttgatt----tgcgttgttgaaactgcaaatcg |
146 |
Q |
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||||||| ||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||| | |
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| T |
5659783 |
catcaaacgaaaattcgttttcaattcctcttaaacaaatgaaaatcggaaatcatgctcaaaatcgttgatttgcatgcgttgttg-------aaattg |
5659691 |
T |
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| Q |
147 |
caaatcatcttcgagtttttcgtgttcttgttcttattcatgtgttcctcttttgatt-gggtgctgaaa-cgtgttccaattctccttcatctgtgctc |
244 |
Q |
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||||| |||||| ||||||| ||||||| ||||||| ||||||||||||||||||||| |||| |||||| ||||||||||||||||||||| |||| || |
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| T |
5659690 |
caaataatcttcaagttttttgtgttctagttcttactcatgtgttcctcttttgattggggtactgaaatcgtgttccaattctccttcatatgtgttc |
5659591 |
T |
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