View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0759_low_83 (Length: 273)
Name: NF0759_low_83
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_low_83 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 180 - 273
Target Start/End: Original strand, 15729523 - 15729616
Alignment:
| Q |
180 |
gcagaaacgtgaaaaagggtttgtaaatattcagtcatcattttatcactttgaccctttcttcaatctattcctcatatttgtttagttttca |
273 |
Q |
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| T |
15729523 |
gcagaaacgtgaaaaagggtttgtaaatattcagtcatcattttatcactttgaccctttcttcaatctattcctcatatttgtttagttttca |
15729616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 15729344 - 15729458
Alignment:
| Q |
1 |
cagtttaatttagttttttgaacttccatccaaacccttccatggcgactccttcatctccaccacgccgacgtcaaccttaacatctcgccaccgtttc |
100 |
Q |
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| T |
15729344 |
cagtttaatttagttttttgaacttccacccaaacccttccatggcgactccttcacctccaccacgccttcgtcagccttagcatctcgccaccgtttc |
15729443 |
T |
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| Q |
101 |
cgttattctcacctc |
115 |
Q |
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| T |
15729444 |
cgctattctcacctc |
15729458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 11345098 - 11345212
Alignment:
| Q |
1 |
cagtttaatttagttttttgaacttccatccaaacccttccatggcgactccttcatctccaccacgccgacgtcaaccttaacatctcgccaccgtttc |
100 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||| ||||||||||||| ||||||||||||| ||||| ||||| ||||||||||||||||| |
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| T |
11345098 |
cagtttaatttagttttttgaacttccacccaaacacttccaaggcgactccttcacctccaccacgccgtcgtcagccttagcatctcgccaccgtttc |
11345197 |
T |
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| Q |
101 |
cgttattctcacctc |
115 |
Q |
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| T |
11345198 |
cgctattctcacctc |
11345212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 180 - 273
Target Start/End: Original strand, 11345277 - 11345370
Alignment:
| Q |
180 |
gcagaaacgtgaaaaagggtttgtaaatattcagtcatcattttatcactttgaccctttcttcaatctattcctcatatttgtttagttttca |
273 |
Q |
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| T |
11345277 |
gcagaaacgtgaaaaagggcttgtaaatattaagtcatcattttatcactttgaccctttcttcaatctattcctcttatttgtttagttttca |
11345370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 23567 - 23647
Alignment:
| Q |
30 |
ccaaacccttccatggcgactccttcatctccaccacgccgacgtcaaccttaacatctcgccaccgtttccgttattctc |
110 |
Q |
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| T |
23567 |
ccaaacccttcaatggcgactccttcacctccaacgcgccgccgtcagcctcaacatctcgccactgtctccgctattctc |
23647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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