View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0759_low_9 (Length: 501)
Name: NF0759_low_9
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 160; Significance: 5e-85; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 309 - 472
Target Start/End: Complemental strand, 24030152 - 24029989
Alignment:
| Q |
309 |
attgtgttaattaaataattaatctgttataattaggtcttgaattttgaacatataattctgctcgactaatctcttaaattttttgagattgtttgct |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24030152 |
attgtgttaattaaataattaatctgttataattaggtcttgaattttgaacatataattctgctcgactaatctcttaaattttttgagattgtttgct |
24030053 |
T |
|
| Q |
409 |
attttactcatagattaatctgtaactattgtctgatgctactgcaatagattaatctaatact |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24030052 |
attttactcatagattaatctgtaactattgtcttatgctactgcaatagattaatctaatact |
24029989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 309 - 472
Target Start/End: Original strand, 24033766 - 24033929
Alignment:
| Q |
309 |
attgtgttaattaaataattaatctgttataattaggtcttgaattttgaacatataattctgctcgactaatctcttaaattttttgagattgtttgct |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24033766 |
attgtgttaattaaataattaatctgttataattaggtcttgaattttgaacatataattctactcgactaatctcttaaattttttgagattgtttgct |
24033865 |
T |
|
| Q |
409 |
attttactcatagattaatctgtaactattgtctgatgctactgcaatagattaatctaatact |
472 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24033866 |
attttactcatacataaatctgtaactattgtctgatgctactgcaatagattaatctaatact |
24033929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 329 - 467
Target Start/End: Original strand, 24033212 - 24033350
Alignment:
| Q |
329 |
aatctgttataattaggtcttgaattttgaacatataattctgctcgactaatctcttaaattttttgagattgtttgctattttactcatagattaatc |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24033212 |
aatctgttataattaggtcttgaattttgaacatataattctgctcgactaatctcttaaattttttgagattgtttgctattttactcatagattaatc |
24033311 |
T |
|
| Q |
429 |
tgtaactattgtctgatgctactgcaatagattaatcta |
467 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24033312 |
tgtaactattgtcttatgctactgcaatagattaatcta |
24033350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 352 - 472
Target Start/End: Complemental strand, 24030365 - 24030245
Alignment:
| Q |
352 |
attttgaacatataattctgctcgactaatctcttaaattttttgagattgtttgctattttactcatagattaatctgtaactattgtctgatgctact |
451 |
Q |
| |
|
|||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24030365 |
attttggacatataattttgctcaactaatctcttaaattttttgagattgtttgctattttactcatagattaatctgtaactattgtcttatgctact |
24030266 |
T |
|
| Q |
452 |
gcaatagattaatctaatact |
472 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
24030265 |
gcagtagattaatctaatact |
24030245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 24031953 - 24032025
Alignment:
| Q |
250 |
tattgttatgaaaaattctttgttgcccctccagatatttgtactctagtcgttgctccattgtgttaattaa |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24031953 |
tattgttatgaaaaattctttgttgcccctccagatatttgtactctagtcgttgctccattgtgttaattaa |
24032025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 34943717 - 34943662
Alignment:
| Q |
192 |
tagatcactttcacggcttgggtgtgatttaacattcttgtgtattccattgttat |
247 |
Q |
| |
|
|||||||||||||| ||||||| |||||| |||| |||||||||||||| ||||| |
|
|
| T |
34943717 |
tagatcactttcacaacttgggtatgatttgacatgcttgtgtattccatcgttat |
34943662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3095 times since January 2019
Visitors: 4805