View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0759_low_91 (Length: 260)
Name: NF0759_low_91
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_low_91 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 7807039 - 7807196
Alignment:
| Q |
7 |
atttgtttattataaataattnnnnnnnntgaccaataattattatttttaaaagttaataaagtatacggtctgtaagtctgcatacgttnnnnnnnng |
106 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7807039 |
atttgtttattataaataattaaaaaaaatgaccaataattattatttttaaaatttaataaagtatacggtctgtaagtttgcatacgttaaaaaaaa- |
7807137 |
T |
|
| Q |
107 |
aagatattttattaccttttcatgttcttatttacccctttagaaaaagattcttttat |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7807138 |
aagatattttattaccttttcatgttcttatttaccccttcagaaaaagattcttttat |
7807196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 7807193 - 7807236
Alignment:
| Q |
194 |
ttattactatttatatatttaattaatgagagagttataatata |
237 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7807193 |
ttattaccatttatatatttaattaatgagagagttataatata |
7807236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 7807235 - 7807272
Alignment:
| Q |
213 |
taattaatgagagagttataatatacattccttctgtg |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7807235 |
taattaatgagagagttataatatacattccttctgtg |
7807272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3992 times since January 2019
Visitors: 4825