View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0759_low_92 (Length: 259)
Name: NF0759_low_92
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_low_92 |
 | |
|
| [»] scaffold0055 (8 HSPs) |
| | |
|
| [»] scaffold0052 (9 HSPs) |
| | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
| [»] scaffold0515 (1 HSPs) |
| | |
|
| [»] scaffold0306 (1 HSPs) |
| | |
|
| [»] scaffold0152 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0055 (Bit Score: 216; Significance: 1e-119; HSPs: 8)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 66493 - 66278
Alignment:
| Q |
21 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66493 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
66394 |
T |
|
| Q |
121 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66393 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
66294 |
T |
|
| Q |
221 |
aatttcatcgtgatga |
236 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
66293 |
aatttcatcgtgatga |
66278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 69325 - 69110
Alignment:
| Q |
21 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69325 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
69226 |
T |
|
| Q |
121 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69225 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
69126 |
T |
|
| Q |
221 |
aatttcatcgtgatga |
236 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
69125 |
aatttcatcgtgatga |
69110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 41622 - 41408
Alignment:
| Q |
21 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41622 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
41523 |
T |
|
| Q |
121 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41522 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
41423 |
T |
|
| Q |
221 |
aatttcatcgtgatg |
235 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
41422 |
aatttcatcgtgatg |
41408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 71763 - 71977
Alignment:
| Q |
21 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
71763 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
71862 |
T |
|
| Q |
121 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
71863 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
71962 |
T |
|
| Q |
221 |
aatttcatcgtgatg |
235 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
71963 |
aatttcatcgtgatg |
71977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #5
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 79871 - 79657
Alignment:
| Q |
21 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79871 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
79772 |
T |
|
| Q |
121 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79771 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
79672 |
T |
|
| Q |
221 |
aatttcatcgtgatg |
235 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
79671 |
aatttcatcgtgatg |
79657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #6
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 32308 - 32094
Alignment:
| Q |
21 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32308 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagaaggactatggccgcttaggccacggaagtttgaggcaataa |
32209 |
T |
|
| Q |
121 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32208 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
32109 |
T |
|
| Q |
221 |
aatttcatcgtgatg |
235 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
32108 |
aatttcatcgtgatg |
32094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #7
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 50870 - 50656
Alignment:
| Q |
21 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
50870 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccatggaagtttgaggcaataa |
50771 |
T |
|
| Q |
121 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50770 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
50671 |
T |
|
| Q |
221 |
aatttcatcgtgatg |
235 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
50670 |
aatttcatcgtgatg |
50656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 4811 - 4871
Alignment:
| Q |
21 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagg |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4811 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagg |
4871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 216; Significance: 1e-119; HSPs: 9)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 35435 - 35650
Alignment:
| Q |
21 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35435 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
35534 |
T |
|
| Q |
121 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35535 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
35634 |
T |
|
| Q |
221 |
aatttcatcgtgatga |
236 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
35635 |
aatttcatcgtgatga |
35650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 6225 - 6011
Alignment:
| Q |
21 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6225 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
6126 |
T |
|
| Q |
121 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6125 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
6026 |
T |
|
| Q |
221 |
aatttcatcgtgatg |
235 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
6025 |
aatttcatcgtgatg |
6011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 27257 - 27043
Alignment:
| Q |
21 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27257 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
27158 |
T |
|
| Q |
121 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27157 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
27058 |
T |
|
| Q |
221 |
aatttcatcgtgatg |
235 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
27057 |
aatttcatcgtgatg |
27043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 47777 - 47563
Alignment:
| Q |
21 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47777 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
47678 |
T |
|
| Q |
121 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47677 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
47578 |
T |
|
| Q |
221 |
aatttcatcgtgatg |
235 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
47577 |
aatttcatcgtgatg |
47563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #5
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 25395 - 25181
Alignment:
| Q |
21 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25395 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccatggaagtttgaggcaataa |
25296 |
T |
|
| Q |
121 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25295 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
25196 |
T |
|
| Q |
221 |
aatttcatcgtgatg |
235 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25195 |
aatttcatcgtgatg |
25181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #6
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 30581 - 30795
Alignment:
| Q |
21 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30581 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccatggaagtttgaggcaataa |
30680 |
T |
|
| Q |
121 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30681 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
30780 |
T |
|
| Q |
221 |
aatttcatcgtgatg |
235 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
30781 |
aatttcatcgtgatg |
30795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #7
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 63757 - 63971
Alignment:
| Q |
21 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
63757 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagaaggactatggccgcttaggccacggaagtttgaggcaataa |
63856 |
T |
|
| Q |
121 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
63857 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
63956 |
T |
|
| Q |
221 |
aatttcatcgtgatg |
235 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
63957 |
aatttcatcgtgatg |
63971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #8
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 27 - 189
Target Start/End: Complemental strand, 42351 - 42189
Alignment:
| Q |
27 |
tcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtc |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42351 |
tcagcctgctaaatagctatgtggaggtaaccctccacggccagctttttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtc |
42252 |
T |
|
| Q |
127 |
tgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctata |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42251 |
tgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtatata |
42189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 79724 - 79664
Alignment:
| Q |
21 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagg |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79724 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagg |
79664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 46039 - 45825
Alignment:
| Q |
21 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46039 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
45940 |
T |
|
| Q |
121 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45939 |
caggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttga |
45840 |
T |
|
| Q |
221 |
aatttcatcgtgatg |
235 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
45839 |
aatttcatcgtgatg |
45825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0515 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0515
Description:
Target: scaffold0515; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 54 - 235
Target Start/End: Original strand, 7550 - 7731
Alignment:
| Q |
54 |
taaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccg |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7550 |
taaccctccacggccagcttcttagagggattatggccgcttaggccacggaagtttaaggcaataacaggtctgtgatgctcttagatgttctgggccg |
7649 |
T |
|
| Q |
154 |
cacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttgaaatttcatcgtgatg |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7650 |
cacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttgaaatttcatcatgatg |
7731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0306 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0306
Description:
Target: scaffold0306; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 54 - 235
Target Start/End: Original strand, 7560 - 7741
Alignment:
| Q |
54 |
taaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccg |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7560 |
taaccctccacggccagcttcttagagggattatggccgcttaggccacggaagtttaaggcaataacaggtctgtgatgctcttagatgttctgggccg |
7659 |
T |
|
| Q |
154 |
cacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttgaaatttcatcgtgatg |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7660 |
cacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttgaaatttcatcatgatg |
7741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 54 - 235
Target Start/End: Original strand, 25171 - 25352
Alignment:
| Q |
54 |
taaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccg |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25171 |
taaccctccacggccagcttcttagagggattatggccgcttaggccacggaagtttaaggcaataacaggtctgtgatgcccttcgatgttctgggccg |
25270 |
T |
|
| Q |
154 |
cacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttgaaatttcatcgtgatg |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
25271 |
cacgcgcgctacactgatgtattcaacgagtctatagccttggccgataggcccgggtaatctttgaaatttcatcatgatg |
25352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 14379964 - 14380058
Alignment:
| Q |
32 |
ctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtc |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14379964 |
ctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttagaccacggaagtttgaggcaataacaggtc |
14380058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 37967466 - 37967365
Alignment:
| Q |
21 |
gagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
120 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37967466 |
gagacctcagcttgctaaataactatgtggaggtaaccctccacagccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataa |
37967367 |
T |
|
| Q |
121 |
ca |
122 |
Q |
| |
|
|| |
|
|
| T |
37967366 |
ca |
37967365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2803 times since January 2019
Visitors: 4801