View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0759_low_93 (Length: 259)

Name: NF0759_low_93
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0759_low_93
NF0759_low_93
[»] chr4 (6 HSPs)
chr4 (136-235)||(52053126-52053225)
chr4 (43-136)||(52053288-52053381)
chr4 (9-50)||(35212745-35212786)
chr4 (1-30)||(52053380-52053409)
chr4 (9-49)||(7214540-7214580)
chr4 (18-50)||(40742591-40742623)
[»] chr8 (7 HSPs)
chr8 (9-52)||(11815827-11815870)
chr8 (9-42)||(12606847-12606880)
chr8 (9-50)||(12985392-12985433)
chr8 (9-54)||(34201064-34201109)
chr8 (9-49)||(10170404-10170444)
chr8 (9-49)||(14227223-14227263)
chr8 (9-49)||(37225761-37225801)
[»] chr7 (3 HSPs)
chr7 (9-54)||(9483380-9483425)
chr7 (9-51)||(3520360-3520402)
chr7 (17-51)||(23128687-23128721)
[»] chr5 (4 HSPs)
chr5 (9-50)||(9449469-9449510)
chr5 (9-51)||(32630753-32630795)
chr5 (9-42)||(23012426-23012459)
chr5 (6-54)||(41558698-41558746)
[»] chr3 (1 HSPs)
chr3 (9-50)||(46191363-46191404)
[»] chr1 (3 HSPs)
chr1 (9-50)||(17080899-17080940)
chr1 (9-54)||(29230061-29230106)
chr1 (10-51)||(47126265-47126306)
[»] chr6 (2 HSPs)
chr6 (10-50)||(17422274-17422314)
chr6 (12-48)||(1893390-1893426)
[»] scaffold0022 (1 HSPs)
scaffold0022 (17-49)||(90844-90876)
[»] chr2 (1 HSPs)
chr2 (10-42)||(27084270-27084302)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 52053225 - 52053126
Alignment:
Q  136 agacaataaagtttttctcaaattattatcgatgttgatgtgtttgtaacaatgcttgaaagagaatagagtgaagagaaaccatttacctcgttggttt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  52053225 agacaataaagtttttctcaaattattatcgatgttgatgtgtttgtaacaatgcttcaaagacaatagagtgaagagaaaccatttacctcgttggttt 52053126  T

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Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 52053381 - 52053288
Alignment:
Q  43 ttggtgtcaatgcattcgtgttgcgtatgtgtttgtgacaatgcttcaaagctatgaaccattgacacggacaccaggctcaacactcacacga 136  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  52053381 ttggtgtcaatgcattcgtgttgtgtatgtgtttgtgacaatgcttcaaagctatgaaccattgacacggacaccaggcgcaacactcacacga 52053288  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 35212745 - 35212786
Alignment:
Q  9 ttacattcaattatatgattttctcaaattattattggtgtc 50  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  35212745 ttacattcaattatttaattttctcaaattattattggtgtc 35212786  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 52053409 - 52053380
Alignment:
Q  1 atgataatttacattcaattatatgatttt 30  Q
    ||||||||||||||||||||||||||||||    
T  52053409 atgataatttacattcaattatatgatttt 52053380  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 7214540 - 7214580
Alignment:
Q  9 ttacattcaattatatgattttctcaaattattattggtgt 49  Q
    ||||||| |||||| ||||||||||||||||||| ||||||    
T  7214540 ttacattaaattatgtgattttctcaaattattagtggtgt 7214580  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 40742623 - 40742591
Alignment:
Q  18 attatatgattttctcaaattattattggtgtc 50  Q
    ||||||||||||||||||||||||| |||||||    
T  40742623 attatatgattttctcaaattattaatggtgtc 40742591  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 11815870 - 11815827
Alignment:
Q  9 ttacattcaattatatgattttctcaaattattattggtgtcaa 52  Q
    |||||||||||||||  |||||||||||||||||||||||||||    
T  11815870 ttacattcaattataacattttctcaaattattattggtgtcaa 11815827  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 12606847 - 12606880
Alignment:
Q  9 ttacattcaattatatgattttctcaaattatta 42  Q
    ||||||| ||||||||||||||||||||||||||    
T  12606847 ttacattgaattatatgattttctcaaattatta 12606880  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 12985433 - 12985392
Alignment:
Q  9 ttacattcaattatatgattttctcaaattattattggtgtc 50  Q
    ||||||| |||||| |||||||||||||||||||| ||||||    
T  12985433 ttacattgaattatgtgattttctcaaattattataggtgtc 12985392  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 34201064 - 34201109
Alignment:
Q  9 ttacattcaattatatgattttctcaaattattattggtgtcaatg 54  Q
    ||||||| |||||| | ||||||||||||||||||| |||||||||    
T  34201064 ttacattgaattatgtcattttctcaaattattattagtgtcaatg 34201109  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 10170404 - 10170444
Alignment:
Q  9 ttacattcaattatatgattttctcaaattattattggtgt 49  Q
    |||||||||||||  | ||||||||||||||||||||||||    
T  10170404 ttacattcaattaatttattttctcaaattattattggtgt 10170444  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 14227263 - 14227223
Alignment:
Q  9 ttacattcaattatatgattttctcaaattattattggtgt 49  Q
    ||||||| |||||| | ||||||||||||||||||||||||    
T  14227263 ttacattgaattatgttattttctcaaattattattggtgt 14227223  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 37225761 - 37225801
Alignment:
Q  9 ttacattcaattatatgattttctcaaattattattggtgt 49  Q
    ||||||| |||||| | ||||||||||||||||||||||||    
T  37225761 ttacattgaattatgttattttctcaaattattattggtgt 37225801  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 9483425 - 9483380
Alignment:
Q  9 ttacattcaattatatgattttctcaaattattattggtgtcaatg 54  Q
    ||||||||||||||   |||||||||||||||||||||||||||||    
T  9483425 ttacattcaattattctattttctcaaattattattggtgtcaatg 9483380  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 3520360 - 3520402
Alignment:
Q  9 ttacattcaattatatgattttctcaaattattattggtgtca 51  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||    
T  3520360 ttacattgaattatatgattttctcaaatgattatcggtgtca 3520402  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 23128687 - 23128721
Alignment:
Q  17 aattatatgattttctcaaattattattggtgtca 51  Q
    ||||||||| |||||||||||||||||||||||||    
T  23128687 aattatatggttttctcaaattattattggtgtca 23128721  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 9449510 - 9449469
Alignment:
Q  9 ttacattcaattatatgattttctcaaattattattggtgtc 50  Q
    ||||||| |||||| |||||||||||||||||||||||||||    
T  9449510 ttacattgaattatgtgattttctcaaattattattggtgtc 9449469  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 32630753 - 32630795
Alignment:
Q  9 ttacattcaattatatgattttctcaaattattattggtgtca 51  Q
    ||||||| |||||||| |||||||||||||||||| |||||||    
T  32630753 ttacattgaattatataattttctcaaattattatcggtgtca 32630795  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 23012426 - 23012459
Alignment:
Q  9 ttacattcaattatatgattttctcaaattatta 42  Q
    ||||||| ||||||||||||||||||||||||||    
T  23012426 ttacattaaattatatgattttctcaaattatta 23012459  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 41558698 - 41558746
Alignment:
Q  6 aatttacattcaattatatgattttctcaaattattattggtgtcaatg 54  Q
    ||||||| || |||||| | ||||||||||||||||||| |||||||||    
T  41558698 aatttactttgaattatgtcattttctcaaattattatttgtgtcaatg 41558746  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 46191363 - 46191404
Alignment:
Q  9 ttacattcaattatatgattttctcaaattattattggtgtc 50  Q
    ||||||| |||||| |||||||||||||||||||||||||||    
T  46191363 ttacatttaattatgtgattttctcaaattattattggtgtc 46191404  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 17080899 - 17080940
Alignment:
Q  9 ttacattcaattatatgattttctcaaattattattggtgtc 50  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  17080899 ttacattcaattatgttattttctcaaattattattggtgtc 17080940  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 29230106 - 29230061
Alignment:
Q  9 ttacattcaattatatgattttctcaaattattattggtgtcaatg 54  Q
    |||||||||||||| | |||||||||||||||||  ||||||||||    
T  29230106 ttacattcaattatgtcattttctcaaattattaccggtgtcaatg 29230061  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 47126306 - 47126265
Alignment:
Q  10 tacattcaattatatgattttctcaaattattattggtgtca 51  Q
    ||||||||||||| | ||||||| ||||||||||||||||||    
T  47126306 tacattcaattatttcattttcttaaattattattggtgtca 47126265  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 17422274 - 17422314
Alignment:
Q  10 tacattcaattatatgattttctcaaattattattggtgtc 50  Q
    ||||||||||||||| |||||||||||||||||| ||||||    
T  17422274 tacattcaattatatcattttctcaaattattatcggtgtc 17422314  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 1893390 - 1893426
Alignment:
Q  12 cattcaattatatgattttctcaaattattattggtg 48  Q
    |||| |||||||| |||||||||||||||||||||||    
T  1893390 cattgaattatatcattttctcaaattattattggtg 1893426  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 90876 - 90844
Alignment:
Q  17 aattatatgattttctcaaattattattggtgt 49  Q
    |||||||||||||||||||||||||| ||||||    
T  90876 aattatatgattttctcaaattattaatggtgt 90844  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 27084302 - 27084270
Alignment:
Q  10 tacattcaattatatgattttctcaaattatta 42  Q
    |||||| ||||||||||||||||||||||||||    
T  27084302 tacattgaattatatgattttctcaaattatta 27084270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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