View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0759_low_96 (Length: 252)
Name: NF0759_low_96
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_low_96 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 47759093 - 47759344
Alignment:
| Q |
1 |
tcgcattgaatttaccttatgagaacaatgtagagcttcttgcctttatgattaatagcccaagtttccatagcatcagcagaactgattcgcggtaatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47759093 |
tcgcattgaatttaccttatgagaacaatgtagagcttcttgcctttatgattaatagcccaagtttccatagcatcagcagaactgattcgcggcaatc |
47759192 |
T |
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| Q |
101 |
tagctttcgtagattcaccaccatgagcagaaacatcactcaccggatctcctctctcaccttcagataaatcctcagacatatcagcagtagcttctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47759193 |
tagctttcgtagattcaccaccatgagcagaaacatcactcaccggatctcctctctcaccttcagataaatcctcagacatatcagcagtagcttctct |
47759292 |
T |
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| Q |
201 |
tctccctctttcacgttccaacctccttttcgtcactctctgctcctcctca |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
47759293 |
tctccctctttcacgttccaacctccttttcgtcactctctgcaccgcctca |
47759344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 45399191 - 45399238
Alignment:
| Q |
192 |
agcttctcttctccctctttcacgttccaacctccttttcgtcactct |
239 |
Q |
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|||||||||||||||||||||| | |||||||||| ||| |||||||| |
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| T |
45399191 |
agcttctcttctccctctttcatggtccaacctccgttttgtcactct |
45399238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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