View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0760_high_25 (Length: 252)

Name: NF0760_high_25
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0760_high_25
NF0760_high_25
[»] chr3 (11 HSPs)
chr3 (13-187)||(5354672-5354849)
chr3 (120-171)||(6931031-6931082)
chr3 (120-172)||(6890976-6891028)
chr3 (120-167)||(45182964-45183011)
chr3 (121-169)||(33040934-33040982)
chr3 (120-167)||(6503706-6503753)
chr3 (93-172)||(19565611-19565690)
chr3 (120-167)||(35514249-35514296)
chr3 (93-169)||(45335856-45335932)
chr3 (120-173)||(11018349-11018402)
chr3 (144-172)||(19237169-19237197)
[»] chr2 (8 HSPs)
chr2 (71-172)||(34523218-34523319)
chr2 (72-136)||(22466262-22466326)
chr2 (120-170)||(8147331-8147381)
chr2 (120-170)||(45418563-45418613)
chr2 (120-169)||(44084740-44084789)
chr2 (72-169)||(770975-771077)
chr2 (120-170)||(26237937-26237987)
chr2 (140-170)||(12756982-12757012)
[»] chr5 (11 HSPs)
chr5 (71-170)||(26543853-26543952)
chr5 (72-170)||(12278949-12279047)
chr5 (120-170)||(31680347-31680397)
chr5 (120-170)||(17332688-17332738)
chr5 (72-170)||(31501805-31501903)
chr5 (93-167)||(37254624-37254698)
chr5 (120-171)||(36291350-36291401)
chr5 (140-170)||(4307240-4307270)
chr5 (140-170)||(15917017-15917047)
chr5 (120-173)||(202616-202669)
chr5 (75-171)||(10033906-10034002)
[»] scaffold0769 (1 HSPs)
scaffold0769 (71-168)||(1259-1356)
[»] scaffold0012 (1 HSPs)
scaffold0012 (19-157)||(194021-194160)
[»] scaffold0168 (1 HSPs)
scaffold0168 (71-134)||(12702-12765)
[»] chr6 (7 HSPs)
chr6 (72-171)||(24697906-24698005)
chr6 (91-170)||(28996710-28996789)
chr6 (120-170)||(13646997-13647047)
chr6 (120-170)||(34385525-34385575)
chr6 (72-150)||(18339106-18339184)
chr6 (93-171)||(29743262-29743340)
chr6 (91-164)||(31028472-31028545)
[»] chr4 (20 HSPs)
chr4 (120-172)||(49908789-49908841)
chr4 (120-170)||(6690372-6690422)
chr4 (120-170)||(5517501-5517551)
chr4 (124-170)||(13393011-13393057)
chr4 (124-170)||(13396150-13396196)
chr4 (93-169)||(30216852-30216928)
chr4 (120-171)||(3293033-3293084)
chr4 (93-170)||(10352994-10353071)
chr4 (120-172)||(7769306-7769358)
chr4 (120-172)||(43143721-43143773)
chr4 (124-171)||(50720487-50720534)
chr4 (120-170)||(6212035-6212085)
chr4 (95-161)||(30109945-30110011)
chr4 (120-170)||(50205214-50205264)
chr4 (120-168)||(17554978-17555026)
chr4 (120-167)||(29996120-29996167)
chr4 (120-170)||(12680199-12680249)
chr4 (112-150)||(36382474-36382512)
chr4 (120-172)||(27363339-27363391)
chr4 (140-172)||(37236648-37236680)
[»] chr1 (5 HSPs)
chr1 (71-134)||(21976994-21977057)
chr1 (122-169)||(31866958-31867005)
chr1 (93-167)||(35907535-35907609)
chr1 (133-172)||(33489665-33489704)
chr1 (120-170)||(44352620-44352670)
[»] scaffold0154 (1 HSPs)
scaffold0154 (72-170)||(31460-31558)
[»] chr8 (5 HSPs)
chr8 (120-170)||(23402088-23402138)
chr8 (120-169)||(2729333-2729382)
chr8 (120-170)||(36408531-36408581)
chr8 (120-164)||(4403994-4404038)
chr8 (120-164)||(16788162-16788206)
[»] chr7 (11 HSPs)
chr7 (120-170)||(7002705-7002755)
chr7 (120-170)||(7048576-7048626)
chr7 (120-170)||(8867868-8867918)
chr7 (93-167)||(34389166-34389240)
chr7 (121-172)||(26624723-26624774)
chr7 (72-170)||(33685544-33685642)
chr7 (95-169)||(37002256-37002330)
chr7 (120-170)||(43184605-43184655)
chr7 (120-150)||(36630816-36630846)
chr7 (75-147)||(3114188-3114260)
chr7 (138-170)||(36658173-36658205)
[»] scaffold0502 (1 HSPs)
scaffold0502 (72-150)||(5230-5308)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 5354849 - 5354672
Alignment:
Q  13 agagattttgtgttgtgaatttgtgatgcgtgtgatgtatttgcccaannnnnnnnnn---gaagtgtgtaaatgggcctataggttgggcctaatgtga 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||| ||||||||||    
T  5354849 agagagtttgtgttgtgaatttgtgatgcgtgtgatgtatttgcccaatttttttttttttgaagtgtgtaaatgggcctataggttggacctaatgtga 5354750  T
Q  110 ggaaattaaggatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctggtcccaggtgatgatgt 187  Q
    | ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||| |||||||    
T  5354749 gaaaattaaggatcgagcccgggcgaccgcccggggtcgccgggcggtgaaactgcccccggtcctaggtaatgatgt 5354672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 6931031 - 6931082
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctgg 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6931031 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctgg 6931082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 6891028 - 6890976
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctggt 172  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  6891028 gatcgagcccgggcgaccgcccggtgtcgccgggcggtgaaaccgcccctggt 6890976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 45183011 - 45182964
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgccc 167  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45183011 gatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 45182964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 33040982 - 33040934
Alignment:
Q  121 atcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccct 169  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  33040982 atcgagcccgagcgaccgcccggggtcgccgggcggtgaaaccgcccct 33040934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 6503706 - 6503753
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgccc 167  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  6503706 gatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 6503753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 19565611 - 19565690
Alignment:
Q  93 ggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctggt 172  Q
    ||||||| ||||||||   ||||||  ||| || |||||||||||| ||||| |||||||||||||||||||||||||||    
T  19565611 ggttgggtctaatgtgcaaaaattatcgattgaacccgggcgaccgcccgggatcgccgggcggtgaaaccgcccctggt 19565690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 35514296 - 35514249
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgccc 167  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||    
T  35514296 gatcgagcccggacgaccgtccggggtcgccgggcggtgaaactgccc 35514249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 45335932 - 45335856
Alignment:
Q  93 ggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccct 169  Q
    ||||||| ||||||||   ||||||  ||| ||| ||||||||||| ||| ||||||||||||||||||||||||||    
T  45335932 ggttgggtctaatgtgtaaaaattatcgattgagtccgggcgaccgcccgaggtcgccgggcggtgaaaccgcccct 45335856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 11018349 - 11018402
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctggtc 173  Q
    ||||||||| ||||||||| |||| |||||||| |||||||||||||| |||||    
T  11018349 gatcgagcctgggcgaccgcccggagtcgccggacggtgaaaccgcccatggtc 11018402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 172
Target Start/End: Complemental strand, 19237197 - 19237169
Alignment:
Q  144 ggtcgccgggcggtgaaaccgcccctggt 172  Q
    |||||||||||||||||||||||||||||    
T  19237197 ggtcgccgggcggtgaaaccgcccctggt 19237169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 71 - 172
Target Start/End: Complemental strand, 34523319 - 34523218
Alignment:
Q  71 gaagtgtgtaaatgggcctataggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  34523319 gaagtgtgtaaatgggcctatatgttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgcccctg 34523220  T
Q  171 gt 172  Q
    ||    
T  34523219 gt 34523218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 22466326 - 22466262
Alignment:
Q  72 aagtgtgtaaatgggcctataggttgggcctaatgtgaggaaattaaggatcgagcccgggcgac 136  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22466326 aagtgtgtaaatgggtctataggttgggcctaatgtgaggaaattacggatcgagcccgggcgac 22466262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 8147381 - 8147331
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8147381 gatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 8147331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 45418613 - 45418563
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  45418613 gatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 45418563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 44084740 - 44084789
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccct 169  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  44084740 gatcgagcccgggcgactgcccggggtcgccgggcggtgaaaccgcccct 44084789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 169
Target Start/End: Complemental strand, 771077 - 770975
Alignment:
Q  72 aagtgtgtaaatgggcctataggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggg-----gtcgccgggcggtgaaaccgcc 166  Q
    |||||||| ||||||| | | ||||||| ||||||||   || |||  ||||||||||||||||||| |||||     ||||||||||||||||||||||    
T  771077 aagtgtgttaatgggctttttggttgggtctaatgtgcaaaagttatcgatcgagcccgggcgaccgcccgggatccggtcgccgggcggtgaaaccgcc 770978  T
Q  167 cct 169  Q
    |||    
T  770977 cct 770975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 26237987 - 26237937
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    ||||||||||||||||||| ||||||||||||||| || ||||| ||||||    
T  26237987 gatcgagcccgggcgaccgcccggggtcgccgggctgtaaaaccacccctg 26237937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 170
Target Start/End: Original strand, 12756982 - 12757012
Alignment:
Q  140 ccggggtcgccgggcggtgaaaccgcccctg 170  Q
    |||||||||||||||||||||||||||||||    
T  12756982 ccggggtcgccgggcggtgaaaccgcccctg 12757012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 71 - 170
Target Start/End: Original strand, 26543853 - 26543952
Alignment:
Q  71 gaagtgtgtaaatgggcctataggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  26543853 gaagtgtgtaaatgggcctatatgttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgcccctg 26543952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 170
Target Start/End: Original strand, 12278949 - 12279047
Alignment:
Q  72 aagtgtgtaaatgggcctataggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    |||||||| ||| ||||| | ||||||| ||||||||   ||||||  ||||||| ||||||||||| ||||| |||||||||||||||||||||||||    
T  12278949 aagtgtgttaattggcctttgggttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgcccgggatcgccgggcggtgaaaccgcccctg 12279047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 31680397 - 31680347
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31680397 gatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 31680347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 17332688 - 17332738
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||    
T  17332688 gatcgagcccgggcgaacgcccggggtcgccgggcggtgaaaccgcccctg 17332738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 170
Target Start/End: Original strand, 31501805 - 31501903
Alignment:
Q  72 aagtgtgtaaatgggcctataggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    |||||||| ||| ||| | | ||||||| ||||||||   ||||||  |||||||||||||| | || |||||||||||||||||||||||||||||||    
T  31501805 aagtgtgttaattggcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcaatcgcccggggtcgccgggcggtgaaaccgcccctg 31501903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 37254698 - 37254624
Alignment:
Q  93 ggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgccc 167  Q
    ||||||| ||||||||   ||||||  ||||||||| ||||||||| | |||||||||| |||||||||||||||    
T  37254698 ggttgggtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccgagcggtgaaaccgccc 37254624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 36291401 - 36291350
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctgg 171  Q
    |||||| ||||| |||||| |||| |||| ||||||||||||||||||||||    
T  36291401 gatcgaacccggacgaccgcccggagtcggcgggcggtgaaaccgcccctgg 36291350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 170
Target Start/End: Original strand, 4307240 - 4307270
Alignment:
Q  140 ccggggtcgccgggcggtgaaaccgcccctg 170  Q
    |||||||||||||||||||||||||||||||    
T  4307240 ccggggtcgccgggcggtgaaaccgcccctg 4307270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 170
Target Start/End: Complemental strand, 15917047 - 15917017
Alignment:
Q  140 ccggggtcgccgggcggtgaaaccgcccctg 170  Q
    |||||||||||||||||||||||||||||||    
T  15917047 ccggggtcgccgggcggtgaaaccgcccctg 15917017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 202669 - 202616
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctggtc 173  Q
    ||||||||||||||||||  |  |||||| ||||||||||||||||||| ||||    
T  202669 gatcgagcccgggcgaccacctagggtcgtcgggcggtgaaaccgcccccggtc 202616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 10034002 - 10033906
Alignment:
Q  75 tgtgtaaatgggcctataggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctgg 171  Q
    ||||| ||||||| | | ||||| | ||||||||   ||||||  |||||||||||||||| ||||||||||||||   ||||  ||||||||||||    
T  10034002 tgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtccggggtcgccatacggtagaaccgcccctgg 10033906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 1356 - 1259
Alignment:
Q  71 gaagtgtgtaaatgggcctataggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccc 168  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  1356 gaagtgtgtaaatgggcctatatgttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgcccc 1259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 194160 - 194021
Alignment:
Q  19 tttgtgttgtgaatttgtgatgcgtgtgatgtatttgcccaannnnnnnnnn-gaagtgtgtaaatgggcctataggttgggcctaatgtgaggaaatta 117  Q
    |||||||||||||||||||||| |||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||    
T  194160 tttgtgttgtgaatttgtgatgtgtgtgatgtatttgccccttttttttttttgaagtgtgtaaatgggcctataggttgggcctaatgtgaggaaatta 194061  T
Q  118 aggatcgagcccgggcgaccgtccggggtcgccgggcggt 157  Q
     |||||||||||||||||||| ||||||||||||||||||    
T  194060 cggatcgagcccgggcgaccgcccggggtcgccgggcggt 194021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 12765 - 12702
Alignment:
Q  71 gaagtgtgtaaatgggcctataggttgggcctaatgtgaggaaattaaggatcgagcccgggcg 134  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  12765 gaagtgtgtaaatgggcctatatgttgggcctaatgtgaggaaattacggatcgagcccgggcg 12702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 171
Target Start/End: Original strand, 24697906 - 24698005
Alignment:
Q  72 aagtgtgtaaatgggcctataggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctgg 171  Q
    |||||||| ||||||| | | |||||||||||||||||  ||||||  ||| ||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  24697906 aagtgtgttaatgggcttttgggttgggcctaatgtgaaaaaattatcgattgagcccgggcgagtgtccggggtcgccgggcggtgaaaccgccactgg 24698005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 28996789 - 28996710
Alignment:
Q  91 taggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    ||||||||| |||||| |   ||||||  |||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  28996789 taggttgggtctaatgcgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 28996710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 13647047 - 13646997
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  13647047 gatcgagcccgggcgaccgcccggggtcgccgggtggtgaaaccgcccctg 13646997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 34385525 - 34385575
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    ||||||||| |||| |||| |||||||||||||||||||||||||||||||    
T  34385525 gatcgagccagggcaaccgcccggggtcgccgggcggtgaaaccgcccctg 34385575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 18339184 - 18339106
Alignment:
Q  72 aagtgtgtaaatgggcctataggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgcc 150  Q
    |||||||| ||| ||| | ||| ||||| ||||||||   ||||||  ||||||||||||||||||| |||||||||||    
T  18339184 aagtgtgttaattggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 18339106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 29743340 - 29743262
Alignment:
Q  93 ggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctgg 171  Q
    ||||||| ||||||||   ||||||  ||| |||||||||| |||| ||||| ||| ||| ||||||||||||||||||    
T  29743340 ggttgggtctaatgtgcaaaaattatcgattgagcccgggcaaccgcccgggatcgtcggacggtgaaaccgcccctgg 29743262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 31028472 - 31028545
Alignment:
Q  91 taggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccg 164  Q
    ||||||||  ||||||||   ||||||  ||||||| |||||| ||||  ||||||||||||||||||||||||    
T  31028472 taggttggatctaatgtgcaaaaattatcgatcgagtccgggcaaccgctcggggtcgccgggcggtgaaaccg 31028545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 49908789 - 49908841
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctggt 172  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  49908789 gatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctggt 49908841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 6690372 - 6690422
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6690372 gatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 6690422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 5517501 - 5517551
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  5517501 gatcgagcccaggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 5517551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 13393011 - 13393057
Alignment:
Q  124 gagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  13393011 gagcccgggcgaccgtccggggtcgctgggcggtgaaaccgcccctg 13393057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 13396150 - 13396196
Alignment:
Q  124 gagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  13396150 gagcccgggcgaccgtccggggtcgctgggcggtgaaaccgcccctg 13396196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 30216852 - 30216928
Alignment:
Q  93 ggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccct 169  Q
    ||||||| ||||||||   ||||||  ||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  30216852 ggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaatccgcccct 30216928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 3293033 - 3293084
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctgg 171  Q
    ||||||||||||||||||| |||||||| | |||||||||||||||||||||    
T  3293033 gatcgagcccgggcgaccgcccggggtcactgggcggtgaaaccgcccctgg 3293084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 10352994 - 10353071
Alignment:
Q  93 ggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    ||||||| ||||||||   ||||||  ||| ||||||||||||||| | ||||||||||| |||||||||||||||||    
T  10352994 ggttgggtctaatgtgcaaaaattatcgattgagcccgggcgaccgccaggggtcgccggacggtgaaaccgcccctg 10353071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 7769358 - 7769306
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctggt 172  Q
    ||||||||||||||||||| | ||||||||||| |||||||||||||| ||||    
T  7769358 gatcgagcccgggcgaccgcctggggtcgccggacggtgaaaccgcccatggt 7769306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 43143721 - 43143773
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctggt 172  Q
    ||||||||||||||||||| ||||||||| ||| |||||||||||||| ||||    
T  43143721 gatcgagcccgggcgaccgcccggggtcgtcggacggtgaaaccgcccatggt 43143773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 50720487 - 50720534
Alignment:
Q  124 gagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctgg 171  Q
    ||||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  50720487 gagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgcctctgg 50720534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 6212035 - 6212085
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    |||||||| |||||||||| ||| ||||||||| |||||||||||||||||    
T  6212035 gatcgagctcgggcgaccgcccgaggtcgccggacggtgaaaccgcccctg 6212085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 30110011 - 30109945
Alignment:
Q  95 ttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgccgggcggtgaaa 161  Q
    ||||| ||||||||   ||||||  ||||||| ||||||||||||||||||||| ||||||||||||    
T  30110011 ttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgtccggggtcgtcgggcggtgaaa 30109945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 50205214 - 50205264
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    |||||||| |||||||||| ||||| ||||||| |||||||||||||||||    
T  50205214 gatcgagctcgggcgaccgcccgggatcgccggacggtgaaaccgcccctg 50205264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 17555026 - 17554978
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccc 168  Q
    ||||||||||||||||||  ||||||||| ||| |||||||||||||||    
T  17555026 gatcgagcccgggcgaccacccggggtcgtcggacggtgaaaccgcccc 17554978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 29996120 - 29996167
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgccc 167  Q
    ||||||| |||| |||||||||||| ||| ||||||||||||||||||    
T  29996120 gatcgagtccggacgaccgtccgggatcgtcgggcggtgaaaccgccc 29996167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 12680199 - 12680249
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    |||||||||||||| |||| | ||||| || ||||||||||||||||||||    
T  12680199 gatcgagcccgggccaccgcctggggttgctgggcggtgaaaccgcccctg 12680249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 36382474 - 36382512
Alignment:
Q  112 aaattaaggatcgagcccgggcgaccgtccggggtcgcc 150  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  36382474 aaattatggatcgagcccgggcgaccgcccggggtcgcc 36382512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 27363391 - 27363339
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctggt 172  Q
    ||||||||||||||||||| ||| |||||||   |||| ||||||||||||||    
T  27363391 gatcgagcccgggcgaccgcccgaggtcgccatacggtaaaaccgcccctggt 27363339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 37236648 - 37236680
Alignment:
Q  140 ccggggtcgccgggcggtgaaaccgcccctggt 172  Q
    |||||||||||||||||||||||||| ||||||    
T  37236648 ccggggtcgccgggcggtgaaaccgctcctggt 37236680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 21976994 - 21977057
Alignment:
Q  71 gaagtgtgtaaatgggcctataggttgggcctaatgtgaggaaattaaggatcgagcccgggcg 134  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||  |||||||    
T  21976994 gaagtgtgtaaatgggcctatatgttgggcctaatgtgaggaaattacggatcgacgccgggcg 21977057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 31867005 - 31866958
Alignment:
Q  122 tcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccct 169  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||    
T  31867005 tcgaacccgggcgaccgcccggggtcgccgggcggtgaaaccgcccct 31866958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 35907609 - 35907535
Alignment:
Q  93 ggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgccc 167  Q
    ||||||| ||||||||   ||||||  |||| |||||||||||||| ||| ||||||||||||||||||||||||    
T  35907609 ggttgggtctaatgtgcaaaaattatcgatcaagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgccc 35907535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 33489704 - 33489665
Alignment:
Q  133 cgaccgtccggggtcgccgggcggtgaaaccgcccctggt 172  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  33489704 cgaccgtccggggtcgccgggtggtgaaaccgcccctggt 33489665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 44352620 - 44352670
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    ||||||||||||||||||  |||||||||||||  ||||||||||||||||    
T  44352620 gatcgagcccgggcgacctcccggggtcgccggatggtgaaaccgcccctg 44352670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 170
Target Start/End: Complemental strand, 31558 - 31460
Alignment:
Q  72 aagtgtgtaaatgggcctataggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    |||||||| ||||||| | | ||||||| ||| ||||   ||||||  ||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  31558 aagtgtgttaatgggcttttgggttgggtctagtgtgcaaaaattatcgatcgagcccgggcgaccgtctggggtcgccgggcgatgaaaccgcccctg 31460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 23402138 - 23402088
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23402138 gatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 23402088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 2729333 - 2729382
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccct 169  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  2729333 gatcgagcccgggcgtccgcccggggtcgccgggcggtgaaaccgcccct 2729382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 36408581 - 36408531
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    ||||||||||||||||||| ||| |||||||||||||||||||| ||||||    
T  36408581 gatcgagcccgggcgaccgcccgaggtcgccgggcggtgaaaccacccctg 36408531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 4404038 - 4403994
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccg 164  Q
    ||||||||||||||||||| | ||||||||||| | |||||||||    
T  4404038 gatcgagcccgggcgaccgcctggggtcgccggccagtgaaaccg 4403994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 16788162 - 16788206
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccg 164  Q
    ||||||||||||||||||| ||||||| |||||||  ||||||||    
T  16788162 gatcgagcccgggcgaccgcccggggttgccgggcaatgaaaccg 16788206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 7002755 - 7002705
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  7002755 gatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgcccctg 7002705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 7048626 - 7048576
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  7048626 gatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgcccctg 7048576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 8867868 - 8867918
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  8867868 gatcgagcccgggcgaccgcccggggtcgccgggcggtgaaactgcccctg 8867918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 34389166 - 34389240
Alignment:
Q  93 ggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgccc 167  Q
    ||||||| ||||||||   ||||||  ||||||||||||||||||| |||||||||||||||||||||| |||||    
T  34389166 ggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaatcgccc 34389240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 26624774 - 26624723
Alignment:
Q  121 atcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctggt 172  Q
    ||||||||| |||||||| ||||||| |||||||||||||||||||||||||    
T  26624774 atcgagcccaggcgaccgcccggggttgccgggcggtgaaaccgcccctggt 26624723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 170
Target Start/End: Complemental strand, 33685642 - 33685544
Alignment:
Q  72 aagtgtgtaaatgggcctataggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    |||||||| ||||||| | | |||||||  |||||||   ||||||  ||||||||||| ||||| | | |||||||||||||||||||||||||||||    
T  33685642 aagtgtgttaatgggcttttgggttgggtttaatgtgcaaaaattatcgatcgagcccgagcgactgcctggggtcgccgggcggtgaaaccgcccctg 33685544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 37002256 - 37002330
Alignment:
Q  95 ttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccct 169  Q
    ||||| ||||||||   ||||||  ||||||| |||  |||||| ||||||||||||||||||||||||||||||    
T  37002256 ttgggtctaatgtgcaaaaattatcgatcgagaccgaacgaccgcccggggtcgccgggcggtgaaaccgcccct 37002330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 43184605 - 43184655
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    ||||||||||| ||||||| ||||  |||||||||||||||||||||||||    
T  43184605 gatcgagcccgagcgaccgcccggaatcgccgggcggtgaaaccgcccctg 43184655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 150
Target Start/End: Complemental strand, 36630846 - 36630816
Alignment:
Q  120 gatcgagcccgggcgaccgtccggggtcgcc 150  Q
    |||||||||||||||||||||||||||||||    
T  36630846 gatcgagcccgggcgaccgtccggggtcgcc 36630816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 3114188 - 3114260
Alignment:
Q  75 tgtgtaaatgggcctataggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtc 147  Q
    ||||| ||||||| | | ||||| | ||||||||   ||||||  ||||||||||||||||||||||||||||    
T  3114188 tgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtc 3114260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 36658205 - 36658173
Alignment:
Q  138 gtccggggtcgccgggcggtgaaaccgcccctg 170  Q
    |||||||||||| ||||||||||||||||||||    
T  36658205 gtccggggtcgctgggcggtgaaaccgcccctg 36658173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 5308 - 5230
Alignment:
Q  72 aagtgtgtaaatgggcctataggttgggcctaatgtgaggaaattaaggatcgagcccgggcgaccgtccggggtcgcc 150  Q
    |||||||| ||| ||| | ||| ||||| ||||||||   ||||||  ||||||||||||||||||| |||||||||||    
T  5308 aagtgtgttaattggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 5230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2807 times since January 2019
Visitors: 4801