View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0760_high_29 (Length: 251)
Name: NF0760_high_29
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0760_high_29 |
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Alignment Details
Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 11073368 - 11073152
Alignment:
| Q |
1 |
ttagtgttgaaaatatgatgaatgacnnnnnnn-taaattgattctaacattatagtggaaaagttgttgttctaaatagtccaatatcttcttcctcgt |
99 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
11073368 |
ttagtgttgaaaatatgatgaatgacaaaaaaaataaattgattctaacattatagtggaaaagttgttgttccaaatagtccaattacttcttcctcgt |
11073269 |
T |
|
| Q |
100 |
aactaagtcacaattccattctttcattcaagatatagacctcttatgtttaaatattaattctaatattaatattatcggat--tatatatttttgtct |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
11073268 |
aactaagtcacaattccattctttcattcaagatatagacctcttacttttaaatattt----taatattaatattatcggataatatatatttttgtct |
11073173 |
T |
|
| Q |
198 |
ctaaaactaaaaccatctaaa |
218 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
11073172 |
ctaaaactaaagccatctaaa |
11073152 |
T |
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