View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0760_high_34 (Length: 248)
Name: NF0760_high_34
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0760_high_34 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 33789168 - 33789415
Alignment:
| Q |
1 |
ttctgtaatatcggactctatttgtattatacaaagtctaggttaataataaactttgtctttnnnnnnnntaaacatcagagttgagactaattgaata |
100 |
Q |
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|||||||||||||| |||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
33789168 |
ttctgtaatatcggtctctatttgtcttatacaaagactaggtttttaataaactttgtcttttaaaaaaataaacatcagagttgagactaattaaata |
33789267 |
T |
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| Q |
101 |
acttaccttagtttcataaccttcaggaagttgcctgatgaaattatgtgcattagcagcagaagaagcagcaacaatttcatccatagtagcatcattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33789268 |
acttaccttagtttcataaccttcaggaagttgcctaatgaaattatgagcattggcagcagaagaagcagcaacaatttcatccatagtagcatcattt |
33789367 |
T |
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| Q |
201 |
ttcccaaacataatattttccttaatagatgtcccaaacatagcatgt |
248 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33789368 |
ttcccaaacataatattttccttaatagatgttccaaacatagcatgt |
33789415 |
T |
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