View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0760_high_40 (Length: 218)
Name: NF0760_high_40
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0760_high_40 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0153 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 41 - 218
Target Start/End: Complemental strand, 48662135 - 48661958
Alignment:
| Q |
41 |
acatcatcaagagaaggtttcaccacacgaaaaagctgaggatacttatgcacccaatgagttctaaaatccattggcaacccaaaatctcttcgaaaat |
140 |
Q |
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| T |
48662135 |
acatcatcaagagaaggcttcaccacacgaaaaagctgaggatacttatgcacccaatgagttctaaaatccattggcaacccaaaatctcttcgaaaat |
48662036 |
T |
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| Q |
141 |
gcgcaattttatccaactgaacacgtttatcaacagacatcataagcaacctaataacatattcagcagctttatctt |
218 |
Q |
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| T |
48662035 |
gcgcaattttatccaactgaacacgtttatcaacagacatcataagcaacctagtaacatattcagcagctttatctt |
48661958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 41 - 218
Target Start/End: Complemental strand, 36906 - 36729
Alignment:
| Q |
41 |
acatcatcaagagaaggtttcaccacacgaaaaagctgaggatacttatgcacccaatgagttctaaaatccattggcaacccaaaatctcttcgaaaat |
140 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36906 |
acatcatcaagagaaggctttaccacacgaaaaagctgaggatacttatgcacccaatgagttctaaaatccattggcaacccaaaatctcttcgaaaat |
36807 |
T |
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| Q |
141 |
gcgcaattttatccaactgaacacgtttatcaacagacatcataagcaacctaataacatattcagcagctttatctt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36806 |
gcgcaattttatccaactgaacacgtttatcaacagacatcataagcaacctagtaacatattcagcagctttatctt |
36729 |
T |
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