View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0760_high_5 (Length: 514)
Name: NF0760_high_5
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0760_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 23 - 486
Target Start/End: Original strand, 25524347 - 25524808
Alignment:
| Q |
23 |
atcatcagtacacccgatccacctgtattagcaacaaccatatcgcgtccgatagcagccgtgagccgaaagagacctaatgccatttggtgcaccataa |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25524347 |
atcatcagtacacccgatccacctgtattagcaacaaccatatcgcgtccgatagcagctgtgagccgaaagagacctaatgccatttggtgcaccataa |
25524446 |
T |
|
| Q |
123 |
gcaataaaagcatgtagcggaagaacctgaaatattaaccggaatgccaagagtatgtatgagttttaaaagaagacagnnnnnnnngtcataagacagt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||| ||| |
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| T |
25524447 |
gcaataaaagcatgtagcggaagaacctgaaatattaaccggaatgccaagagtatgtattagttt-aaaagaagacagaaaaaaa-gtcataagagagt |
25524544 |
T |
|
| Q |
223 |
atatgaatgtaaagtaaaatacctcccaggtgcaggagcaactccaataatgtagtacacgacaccagtccatgcaacagattcaacaatggaataagga |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25524545 |
atatgaatgtaaagtaaaatacctcccaggtgcaggagcaaatccaataatgtagtacacgacaccagtccacgcaacagattcaacaatggaataagga |
25524644 |
T |
|
| Q |
323 |
aattgaagaatccatgtggacaatgtccatgcccatgccggataaaataaattgcctctttgtttatagaagacaggaagacgaaatatcaaaagtgaca |
422 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25524645 |
aattgaagaatccatgtggacagtgtccatgcccatgccggataaaataaattgcctctttgtttatagaagacaggaagacgaaatatcaaaagtgaca |
25524744 |
T |
|
| Q |
423 |
actcagtagtcccattaaacagcatgtgcaccaatgcataaaatagtgcagacatgtagagatt |
486 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25524745 |
actcagtagtcccattaaacagcatgtgcaccaatgcataaaatagtgcagacatgtagagatt |
25524808 |
T |
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