View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0760_high_7 (Length: 424)
Name: NF0760_high_7
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0760_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 66 - 184
Target Start/End: Complemental strand, 21657969 - 21657851
Alignment:
| Q |
66 |
ttagcaattgatatgataatccatttggccttaacttgatcttcatctctagtttcattttcaccgacaaatggtttttgaaaatctatatactctttaa |
165 |
Q |
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| T |
21657969 |
ttagtaattgatatgagaatccatttgaccttgacttgatcttcatctctagtttcattttcatcgacatatgatttttgaaaatctatatactctttaa |
21657870 |
T |
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| Q |
166 |
ttagcttgcaccttttttc |
184 |
Q |
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|||||||||| |||||||| |
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| T |
21657869 |
ttagcttgcatcttttttc |
21657851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 322 - 391
Target Start/End: Complemental strand, 30366037 - 30365969
Alignment:
| Q |
322 |
aagcagctaacagagccataaattgtgatttggttgagtgaaatcgaacagagcaacaacaacagtgaac |
391 |
Q |
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|||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30366037 |
aagcagctaacagagcaa-aaatcgtgatttggttgagtgaaatcgaacagagcaacaacaacagtgaac |
30365969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 30366138 - 30366106
Alignment:
| Q |
25 |
catcatacgagaccacaaaccacaaaattcctt |
57 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
30366138 |
catcatacgagaccacaaaccacaaaattcctt |
30366106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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