View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0760_low_12 (Length: 462)
Name: NF0760_low_12
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0760_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 30 - 391
Target Start/End: Original strand, 30730431 - 30730799
Alignment:
| Q |
30 |
gggagagactttgttcctctattttggaagcaacgcctaatgatatgcttaggggctgcaaagggacttttatatcttcacaccggagctaaacaaagca |
129 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30730431 |
gggagagactttgttcctctatcttggaagcaacgcctagcgatatgcttaggggctgcaaagggacttttatatcttcacactggagctaaacaaagca |
30730530 |
T |
|
| Q |
130 |
taattcaccatgacgtgaagacaacaaacattctcttggacaaaaagcttgtgccaaaagttgctgattttggcatatcgaaaaagggtcctattcttga |
229 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30730531 |
taattcaccgtgacgtgaagacaacaaacattctcttggacaaaaagattgtgccaaaagtttctgattttggcatatcgaaaaagggtcctattcttga |
30730630 |
T |
|
| Q |
230 |
taagagtcacgttacaactaatgtaaagggtagttttggctatgttgatcctgaatattttaggacta-------aactaagaaatcagatgttttctct |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30730631 |
taagagtcacgttacaactaatgtaaagggtagttttggctaagttgatccagaatattttaggactaaatttctaactaagaaatcagatgttttctct |
30730730 |
T |
|
| Q |
323 |
tttggagtggtgttgattgaagttatatgtggaaaacctgctttagatgatgcccttccaacgcaacag |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30730731 |
tttggagtggtgttgattgaagttatatgtggaaaacctgctttagatgatgcccttccaacgcaacag |
30730799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 30 - 391
Target Start/End: Complemental strand, 14671389 - 14671021
Alignment:
| Q |
30 |
gggagagactttgttcctctattttggaagcaacgcctaatgatatgcttaggggctgcaaagggacttttatatcttcacaccggagctaaacaaagca |
129 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
14671389 |
gggagagactttgttcctctatcttggaagcaacgcctaatgatatgcttaggggctgcaaagggacttttatatcttcacactggagctaaagaaagca |
14671290 |
T |
|
| Q |
130 |
taattcaccatgacgtgaagacaacaaacattctcttggacaaaaagcttgtgccaaaagttgctgattttggcatatcgaaaaagggtcctattcttga |
229 |
Q |
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||||||||| |||| | |||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14671289 |
taattcaccgtgacataaagacaacaaacattctcttggacgaaaatcttgtaccaaaagttgctgattttggcatatcgaaaaagggtcctattcttga |
14671190 |
T |
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| Q |
230 |
taagagtcacgttacaactaatgtaaagggtagttttggctatgttgatcctgaatattttaggacta-------aactaagaaatcagatgttttctct |
322 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14671189 |
taagagtcacgttacaactaatgtaaagggtagttttggctatgttgatcctgaatattttaggactaagtttctaactaagaaatcagatgttttctct |
14671090 |
T |
|
| Q |
323 |
tttggagtggtgttgattgaagttatatgtggaaaacctgctttagatgatgcccttccaacgcaacag |
391 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14671089 |
tttggagtggtgttgattgaagttatatgtggaaaacctgctttagatgatgcccttccaacgcaacag |
14671021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 30 - 391
Target Start/End: Original strand, 14684925 - 14685292
Alignment:
| Q |
30 |
gggagagactttgttcctctattttggaagcaacgcctaatgatatgcttaggggctgcaaagggacttttatatcttcacaccggagctaaacaaagca |
129 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14684925 |
gggagagactttgttcctctatcttggaagcaacgcctaatgatatgcttaggggc-gcaaagggacttttatatcttcacactggagctaaacaaagca |
14685023 |
T |
|
| Q |
130 |
taattcaccatgacgtgaagacaacaaacattctcttggacaaaaagcttgtgccaaaagttgctgattttggcatatcgaaaaagggtcctattcttga |
229 |
Q |
| |
|
||||||||| ||| ||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14685024 |
taattcaccgtgatgtgaagacagcaaacattctcttggacgaaaatcttgtgccaaaagttgctgattttggcatatcgaaaaagggtccaattcttga |
14685123 |
T |
|
| Q |
230 |
taagagtcacgttacaactaatgtaaagggtagttttggctatgttgatcctgaatattttaggacta-------aactaagaaatcagatgttttctct |
322 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14685124 |
taagagtcacgttacaacgaatgtaaagggtagttttggctatgttgatcctgaatattttaggactacatttctaactaagaaatcagatgttttctct |
14685223 |
T |
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| Q |
323 |
tttggagtggtgttgattgaagttatatgtggaaaacctgctttagatgatgcccttccaacgcaacag |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14685224 |
tttggagtggtgttgattgaagttatatgtggaaaacctgctttagatgatgcccttccaacgcaacag |
14685292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 298 - 391
Target Start/End: Original strand, 14704889 - 14704982
Alignment:
| Q |
298 |
aactaagaaatcagatgttttctcttttggagtggtgttgattgaagttatatgtggaaaacctgctttagatgatgcccttccaacgcaacag |
391 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14704889 |
aactaagaaatcagatgttttctcttatggagtggtgttgattgaagttatatgtggaaaacctgctttagatgatgcccttccaacgcaacag |
14704982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 14676767 - 14676729
Alignment:
| Q |
30 |
gggagagactttgttcctctattttggaagcaacgccta |
68 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |
|
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| T |
14676767 |
gggagagactttgttcctctatcttggaagcaacgccta |
14676729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 30 - 387
Target Start/End: Original strand, 24058636 - 24059000
Alignment:
| Q |
30 |
gggagagactttgttcctctattttggaagcaacgcctaatgatatgcttaggggctgcaaagggacttttatatcttcacaccggagctaaacaaagca |
129 |
Q |
| |
|
||||||||||||||||| || | |||||||||||| || |||| || | |||||||| || |||||| | ||||||||||| |||||||||||||||| |
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| T |
24058636 |
gggagagactttgttccactgtcttggaagcaacgtcttgggataggcatcggggctgcgaaaggacttctttatcttcacactggagctaaacaaagca |
24058735 |
T |
|
| Q |
130 |
taattcaccatgacgtgaagacaacaaacattctcttggacaaaaagcttgtgccaaaagttgctgattttggcatatcgaaaaagggtcctattcttga |
229 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
24058736 |
taattcaccgtgatgtgaagacaacaaacattctcttggatgaaaaccttgtgccaaaagttgctgattttggcatatcaaaaaagggtcctcttcttga |
24058835 |
T |
|
| Q |
230 |
taagagtcacgttacaactaatgtaaagggtagttttggctatgttgatcctgaatattttaggactaa-------actaagaaatcagatgttttctct |
322 |
Q |
| |
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|||||| ||||||||||| ||||||||||||| || |||||| ||||||| ||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
24058836 |
taagagccacgttacaacccatgtaaagggtagcttcggctatcttgatccagaatattttaggactaaatttcttactaagaaatcagatgtttactcg |
24058935 |
T |
|
| Q |
323 |
tttggagtggtgttgattgaagttatatgtggaaaacctgctttagatgatgcccttccaacgca |
387 |
Q |
| |
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|| || ||||||||| |||||||||||||||| || |||||| |||||||||||||||||||||| |
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|
| T |
24058936 |
ttcggggtggtgttgcttgaagttatatgtgggaagcctgctctagatgatgcccttccaacgca |
24059000 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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