View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0760_low_31 (Length: 339)
Name: NF0760_low_31
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0760_low_31 |
 | |
|
| [»] scaffold0295 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
| [»] scaffold0416 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 34 - 328
Target Start/End: Complemental strand, 26695418 - 26695124
Alignment:
| Q |
34 |
gctgttgcggggaaattattctcatacaaataatagccagtctttctgccaaaatcttagtaacaattttaaattgaaaattggccaatgcaattgggcg |
133 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26695418 |
gctgttgaggggaaattattctcatgcaaataatagccagtctgtcagccaaaatcttagtaataattttaaattgaaaattggccaatgcaattgggcg |
26695319 |
T |
|
| Q |
134 |
aaaatcccccatggaagcagccccagggactttaggaatcagcacctgaatgttggcattaatatttggaatcagcgcccctgtgtaaaagaagtcttgt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26695318 |
gaaatcccccatggaagcagccccagggactttaggaatcagcaccagaatgttggcattaatatttggaatcagcgcccctgtgtaaaagaaatcttgt |
26695219 |
T |
|
| Q |
234 |
accgaactcactacatcgaccgccacaatgtcccaaaaatgttgatagaaatgtcccccgaagccatcaggaccaggagctccatccgcgttcat |
328 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26695218 |
aacgaactcactacatcgaccgccacaatgtcccaaaaatattgatagaaatgtcccccgaagccatcaggaccaggagctccatccgcgttcat |
26695124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 34 - 328
Target Start/End: Complemental strand, 26965150 - 26964856
Alignment:
| Q |
34 |
gctgttgcggggaaattattctcatacaaataatagccagtctttctgccaaaatcttagtaacaattttaaattgaaaattggccaatgcaattgggcg |
133 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26965150 |
gctgttgaggggaaattattctcatgcaaataatagccagtctgtcagccaaaatcttagtaataattttaaattgaaaattggccaatgcaattgggcg |
26965051 |
T |
|
| Q |
134 |
aaaatcccccatggaagcagccccagggactttaggaatcagcacctgaatgttggcattaatatttggaatcagcgcccctgtgtaaaagaagtcttgt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26965050 |
gaaatcccccatggaagcagccccagggactttaggaatcagcaccagaatgttggcattaatatttggaatcagcgcccctgtgtaaaagaaatcttgt |
26964951 |
T |
|
| Q |
234 |
accgaactcactacatcgaccgccacaatgtcccaaaaatgttgatagaaatgtcccccgaagccatcaggaccaggagctccatccgcgttcat |
328 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26964950 |
aacgaactcactacatcgaccgccacaatgtcccaaaaatattgatagaaatgtcccccgaagccatcaggaccaggagctccatccgcgttcat |
26964856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 313
Target Start/End: Complemental strand, 20852256 - 20851979
Alignment:
| Q |
36 |
tgttgcggggaaattattctcatacaaataatagccagtctttctgccaaaatcttagtaacaattttaaattgaaaattggccaatgcaattgggcgaa |
135 |
Q |
| |
|
||||| || ||||| |||| |||||| || | |||||||| || |||||||| || |||| | ||| |||||||| ||||| || ||||| || | || |
|
|
| T |
20852256 |
tgttgaggagaaatgattcgcatacagatcagtgccagtctgtcagccaaaatttttgtaatgactttgaattgaaagttggctaaagcaataggtctaa |
20852157 |
T |
|
| Q |
136 |
aatcccccatggaagcagccccagggactttaggaatcagcacctgaatgttggcattaatatttggaatcagcgcccctgtgtaaaagaagtcttgtac |
235 |
Q |
| |
|
| ||||||||||| ||||| | ||||| || ||||| |||||| ||| || ||||||| ||| ||||||| ||||| |||||||| || ||||| || |
|
|
| T |
20852156 |
agtcccccatggaggcagcactcgggaccttcggaataagcaccaaaatattagcattaagattcggaatcaaagcccccgtgtaaaaaaactcttggac |
20852057 |
T |
|
| Q |
236 |
cgaactcactacatcgaccgccacaatgtcccaaaaatgttgatagaaatgtcccccgaagccatcaggaccaggagc |
313 |
Q |
| |
|
||| | || ||||| || | ||||||||||||||||| ||| | ||||| ||||| ||||| |||||||| ||||| |
|
|
| T |
20852056 |
cgagccaacaacatccacaccaacaatgtcccaaaaatgctgaaaaaaatgacccccaaagccgtcaggacccggagc |
20851979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 31555104 - 31555165
Alignment:
| Q |
81 |
gccaaaatcttagtaacaattttaaattgaaaattggccaatgcaattgggcgaaaatcccc |
142 |
Q |
| |
|
||||| |||||||| |||||||||||||| |||||||| || ||||| || ||||||||||| |
|
|
| T |
31555104 |
gccaatatcttagtcacaattttaaattggaaattggctaaagcaataggtcgaaaatcccc |
31555165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 34 - 328
Target Start/End: Original strand, 22833968 - 22834263
Alignment:
| Q |
34 |
gctgttgcggggaaattattctcatacaaataatagccagtctttctgccaaaatcttagtaacaattttaaattgaaaattggccaatgcaattgggcg |
133 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
22833968 |
gctgttgaggggaaattattctcatgcaaataatagccagtctgtcagccaaaatcttagtaataattttaaattgaaaattggccaatgcaattgggcg |
22834067 |
T |
|
| Q |
134 |
aaaatcccccatggaagcagccc-cagggactttaggaatcagcacctgaatgttggcattaatatttggaatcagcgcccctgtgtaaaagaagtcttg |
232 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22834068 |
gaaatcccccatggaagcagcccacagggactttaggaatcagcaccagaatgttggcataaatatttggaatcagcgcccctgtgtaaaagaaatcttg |
22834167 |
T |
|
| Q |
233 |
taccgaactcactacatcgaccgccacaatgtcccaaaaatgttgatagaaatgtcccccgaagccatcaggaccaggagctccatccgcgttcat |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22834168 |
taccgaactcactacatcgaccgccacaatgtcccaaaaatattgatagaaatggcccccgaagccatcaggaccaggagctccatccgcgttcat |
22834263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 16004176 - 16004249
Alignment:
| Q |
99 |
attttaaattgaaaattggccaatgcaattgggcgaaaatcccccatggaagcagccccagggactttaggaat |
172 |
Q |
| |
|
||||| |||||||||||||| || ||||| || ||||||||| |||| |||| ||||||||||| ||||||||| |
|
|
| T |
16004176 |
attttgaattgaaaattggctaaagcaatgggtcgaaaatccgccatagaagtagccccagggattttaggaat |
16004249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 16224592 - 16224519
Alignment:
| Q |
81 |
gccaaaatcttagtaacaattttaaattgaaaattggccaatgcaattgggcgaaaatcccccatggaagcagc |
154 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| || | | ||| || |||||||||||||| |||||||| |
|
|
| T |
16224592 |
gccaaaatcttcgcaacaattttaaattgaaaatttgcgagagaaataggacgaaaatcccccattgaagcagc |
16224519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 56 - 328
Target Start/End: Original strand, 32133943 - 32134215
Alignment:
| Q |
56 |
catacaaataatagccagtctttctgccaaaatcttagtaacaattttaaattgaaaattggccaatgcaattgggcgaaaatcccccatggaagcagcc |
155 |
Q |
| |
|
||||||||||| ||| ||||| || |||||||| ||||||| | ||| || ||||| ||||||| ||||| || | ||| ||||||||||| ||||| |
|
|
| T |
32133943 |
catacaaataagagcaagtctgtcagccaaaattttagtaatgactttgaactgaaagttggccagagcaataggtctaaagtcccccatggaggcagca |
32134042 |
T |
|
| Q |
156 |
ccagggactttaggaatcagcacctgaatgttggcattaatatttggaatcagcgcccctgtgtaaaagaagtcttgtaccgaactcactacatcgaccg |
255 |
Q |
| |
|
|| ||||||||||||| || |||| |||||| ||||| | ||| ||||||| ||| |||||||| || | |||||| ||||| || ||||||||| |
|
|
| T |
32134043 |
cctgggactttaggaagcaacaccaaaatgttagcattgagattaggaatcaaatgccccgtgtaaaaaaattgttgtactgaactgacaacatcgaccc |
32134142 |
T |
|
| Q |
256 |
ccacaatgtcccaaaaatgttgatagaaatgtcccccgaagccatcaggaccaggagctccatccgcgttcat |
328 |
Q |
| |
|
| ||||||||||||||||| ||||| ||||||||||| ||||||||| | || ||||| ||||| || ||||| |
|
|
| T |
32134143 |
caacaatgtcccaaaaatgctgataaaaatgtcccccaaagccatcatggcccggagcgccatctgcattcat |
32134215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 51 - 313
Target Start/End: Original strand, 22023950 - 22024212
Alignment:
| Q |
51 |
attctcatacaaataatagccagtctttctgccaaaatcttagtaacaattttaaattgaaaattggccaatgcaattgggcgaaaatcccccatggaag |
150 |
Q |
| |
|
|||| ||||||||| | |||||||| || |||||||| || |||| | ||| |||||||| |||||||| ||||| || | ||| ||||||||||| | |
|
|
| T |
22023950 |
attcgcatacaaatcagcgccagtctgtcagccaaaatttttgtaatgactttgaattgaaagttggccaaagcaataggtctaaagtcccccatggagg |
22024049 |
T |
|
| Q |
151 |
cagccccagggactttaggaatcagcacctgaatgttggcattaatatttggaatcagcgcccctgtgtaaaagaagtcttgtaccgaactcactacatc |
250 |
Q |
| |
|
|||| || ||||| || ||||| |||||| ||| || ||||||| ||| ||||||| ||||| |||||||| || ||||| ||||| | || ||||| |
|
|
| T |
22024050 |
cagcacccgggaccttcggaataagcaccaaaatattagcattaagattcggaatcaaagcccccgtgtaaaaaaactcttggaccgagccaacaacatc |
22024149 |
T |
|
| Q |
251 |
gaccgccacaatgtcccaaaaatgttgatagaaatgtcccccgaagccatcaggaccaggagc |
313 |
Q |
| |
|
|| | ||||||||||||||||| ||| | ||||| ||||| ||||| |||||||| ||||| |
|
|
| T |
22024150 |
cacaccaacaatgtcccaaaaatgctgaaaaaaatgacccccaaagccgtcaggacccggagc |
22024212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 44377572 - 44377508
Alignment:
| Q |
81 |
gccaaaatcttagtaacaattttaaattgaaaattggccaatgcaattgggcgaaaatcccccat |
145 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| || || ||||| || || ||||| ||||| |
|
|
| T |
44377572 |
gccaaaatcttcgtcacaattttaaattgaaaattagctaaagcaataggtcggaaatctcccat |
44377508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 44393152 - 44393088
Alignment:
| Q |
81 |
gccaaaatcttagtaacaattttaaattgaaaattggccaatgcaattgggcgaaaatcccccat |
145 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| || || ||||| || || ||||| ||||| |
|
|
| T |
44393152 |
gccaaaatcttcgtcacaattttaaattgaaaattagctaaagcaataggtcggaaatctcccat |
44393088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 81 - 277
Target Start/End: Original strand, 20732 - 20928
Alignment:
| Q |
81 |
gccaaaatcttagtaacaattttaaattgaaaattggccaatgcaattgggcgaaaatcccccatggaagcagccccagggactttaggaatcagcacct |
180 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||| ||||| || ||||| | ||| |||||||| |||||||| || ||| | ||||||||||| ||| |
|
|
| T |
20732 |
gccaaaattttcgtaacaattttgtattgaaaatttgccaaagctattggcctaaagtcccccatagaagcagcacctggggccttaggaatcagaacca |
20831 |
T |
|
| Q |
181 |
gaatgttggcattaatatttggaatcagcgcccctgtgtaaaagaagtcttgtaccgaactcactacatcgaccgccacaatgtcccaaaaatgttg |
277 |
Q |
| |
|
|| || | || ||||| || ||||||||||| |||||||| || || || ||||||||||| ||||| | || ||||||||||||||||||||| |
|
|
| T |
20832 |
aaagattagagttcatattcgggatcagcgcccccgtgtaaaaaaattcctgcaccgaactcaccacatccatcgacacaatgtcccaaaaatgttg |
20928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 201040 - 201113
Alignment:
| Q |
99 |
attttaaattgaaaattggccaatgcaattgggcgaaaatcccccatggaagcagccccagggactttaggaat |
172 |
Q |
| |
|
||||| |||||||||||||| || ||||| || ||||||||| |||| |||| ||||||||||| ||||||||| |
|
|
| T |
201040 |
attttgaattgaaaattggctaaagcaatgggtcgaaaatccgccatagaagtagccccagggattttaggaat |
201113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 12190 - 12126
Alignment:
| Q |
81 |
gccaaaatcttagtaacaattttaaattgaaaattggccaatgcaattgggcgaaaatcccccat |
145 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || || ||||| || |||||||| ||||| |
|
|
| T |
12190 |
gccaaaatcttagtcacaattttaaattgaaaattagctaaagcaataggtcgaaaatctcccat |
12126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 307
Target Start/End: Original strand, 12675034 - 12675242
Alignment:
| Q |
99 |
attttaaattgaaaattggccaatgcaattgggcgaaaatcccccatggaagcagccccagggactttaggaatcagcacctgaatgttggcattaatat |
198 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||||||||| |||| |||| ||| ||| || ||||||||| || ||| ||||| | ||| | || |
|
|
| T |
12675034 |
attttgaattgaaaattggccaaagcaatagggcgaaaatccgccatagaagtagctccattgattttaggaattagaaccaatatgttcgaatttaaat |
12675133 |
T |
|
| Q |
199 |
ttggaatcagcgcccctgtgtaaaagaagtcttgtaccgaactcactacatcgaccgccacaatgtcccaaaaatgttgatagaaatgtcccccgaagcc |
298 |
Q |
| |
|
| ||||| | | || ||| |||| || ||||| || || ||||| || || | ||||| ||||||||||| || ||||| ||||||||||| || || |
|
|
| T |
12675134 |
tcggaataatatctccagtgcaaaaaaaatcttgaactgagctcaccacgtctgcagccacgatgtcccaaaagtgctgataaaaatgtcccccaaaacc |
12675233 |
T |
|
| Q |
299 |
atcaggacc |
307 |
Q |
| |
|
||||||||| |
|
|
| T |
12675234 |
atcaggacc |
12675242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 12685123 - 12685199
Alignment:
| Q |
99 |
attttaaattgaaaattggccaatgcaattgggcgaaaatcccccatggaagcagccccagggactttaggaatcag |
175 |
Q |
| |
|
||||| ||| ||||||||||||| ||||| ||||||| |||| |||| |||| ||| ||| ||| |||||||||||| |
|
|
| T |
12685123 |
attttgaatcgaaaattggccaaagcaatagggcgaatatccgccatagaagtagctccaaggattttaggaatcag |
12685199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 42064893 - 42064843
Alignment:
| Q |
222 |
aagaagtcttgtaccgaactcactacatcgaccgccacaatgtcccaaaaa |
272 |
Q |
| |
|
||||| ||||| ||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
42064893 |
aagaattcttgaaccgaactcacaacatccaccgccacaatgtcccaaaaa |
42064843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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