View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0760_low_32 (Length: 337)
Name: NF0760_low_32
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0760_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 24715942 - 24716249
Alignment:
| Q |
1 |
tttcaacatcaaattatcgtaaaacatgattagtttcaaacaacaaaatcaaagagatataaaaattaccagtagatatcaatagatcaagagtcttatc |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24715942 |
tttcaacatcaaattatcataaaacatgattagttttaaacaacaaaatcaaagagatataaaaattaccagtagatatcaatagatcaagagtcttatc |
24716041 |
T |
|
| Q |
101 |
atcaggattctctccagtaacagtnnnnnnncgccgttgaacagtttctctatactccgttgtaataacttcacgcaaacgattaaaactctccatagaa |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24716042 |
atcaggattctctccagtaacagtaaaaaaacgccgttgaacagtctctctatactccgttgtaataacttcacgcaaacgattaaaactctccatagaa |
24716141 |
T |
|
| Q |
201 |
tccttcaacttcttcttcaatccattcaccaccgaactcctcgtccggtccgacgacgaacccggtccacacccttccaaattccggttcgctgcattag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24716142 |
tccttcaacttcttcttcaatccattcaccaccgaactcctcgtccggtccgacgatgaacccggtccacacccttccaaattccggttcgctgcattag |
24716241 |
T |
|
| Q |
301 |
atctttcc |
308 |
Q |
| |
|
|||||||| |
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|
| T |
24716242 |
atctttcc |
24716249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 43315784 - 43315732
Alignment:
| Q |
182 |
attaaaactctccatagaatccttcaacttcttcttcaatccattcaccaccg |
234 |
Q |
| |
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||||||||||||||| ||||| ||||| |||||| |||| ||| ||||||||| |
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| T |
43315784 |
attaaaactctccatcgaatctttcaaattcttcctcaaaccactcaccaccg |
43315732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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