View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0760_low_33 (Length: 337)

Name: NF0760_low_33
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0760_low_33
NF0760_low_33
[»] chr1 (3 HSPs)
chr1 (37-195)||(3324934-3325092)
chr1 (108-195)||(48315143-48315225)
chr1 (226-257)||(3324663-3324694)
[»] chr8 (4 HSPs)
chr8 (82-197)||(10227319-10227434)
chr8 (138-257)||(10227209-10227328)
chr8 (138-195)||(28733209-28733266)
chr8 (138-195)||(42476558-42476615)
[»] chr4 (6 HSPs)
chr4 (109-195)||(2737758-2737844)
chr4 (110-195)||(38372691-38372776)
chr4 (109-189)||(45065538-45065613)
chr4 (146-195)||(39264726-39264775)
chr4 (138-191)||(48997097-48997150)
chr4 (107-140)||(39264674-39264707)
[»] chr2 (2 HSPs)
chr2 (114-193)||(23757669-23757748)
chr2 (109-195)||(12197380-12197469)
[»] chr6 (1 HSPs)
chr6 (113-195)||(23112076-23112158)
[»] chr5 (2 HSPs)
chr5 (138-195)||(37344564-37344621)
chr5 (109-139)||(37344522-37344552)
[»] chr3 (4 HSPs)
chr3 (113-195)||(50301813-50301894)
chr3 (140-191)||(32862054-32862105)
chr3 (109-150)||(25638460-25638501)
chr3 (152-195)||(10773480-10773523)
[»] scaffold0064 (1 HSPs)
scaffold0064 (147-195)||(53246-53294)


Alignment Details
Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 37 - 195
Target Start/End: Complemental strand, 3325092 - 3324934
Alignment:
Q  37 tgttactcatggtactattgaatatnnnnnnnntgactactttgtgaattatgggcatgtgtctactgtctctaggggtgggcaaaaatatccaaaaact 136  Q
    |||||||||||||||||||||||||        |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |    
T  3325092 tgttactcatggtactattgaatataaaaaaaatgactactttgtgaattatgtgcatgtgtccactgtctctaggggtgggcaaaaatatccaaaaatt 3324993  T
Q  137 gaaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaac 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3324992 gaaccgaactgaaccaaactaaaattaactgaaccattacattggttattaaaccgaac 3324934  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 195
Target Start/End: Complemental strand, 48315225 - 48315143
Alignment:
Q  108 ctaggggtgggcaaaaatatccaaaaactgaaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaac 195  Q
    |||||| ||| ||||||||||||||||| ||| |||||     |||||||||||||||||||||||||||||| ||||| || |||||    
T  48315225 ctagggatggccaaaaatatccaaaaaccgaatcgaac-----caaactaaaattaactgaaccattacattgattattaaatcgaac 48315143  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 257
Target Start/End: Complemental strand, 3324694 - 3324663
Alignment:
Q  226 cgatggcttcttcttcactacttcttttgcct 257  Q
    ||||||||||||||||||||||||||||||||    
T  3324694 cgatggcttcttcttcactacttcttttgcct 3324663  T

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Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 82 - 197
Target Start/End: Complemental strand, 10227434 - 10227319
Alignment:
Q  82 gaattatgggcatgtgtctactgtctctaggggtgggcaaaaatatccaaaaactgaaccgaactgaaccaaactaaaattaactgaaccattacattgg 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10227434 gaattatgggcatgtgtctactgtctctaggggtgggcaaaaatatccaaaaactgaaccgaactgaaccaaactaaaattaactgaaccattacattgg 10227335  T
Q  182 ttattgaaccgaactg 197  Q
    ||||| ||||||||||    
T  10227334 ttattaaaccgaactg 10227319  T

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Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 138 - 257
Target Start/End: Complemental strand, 10227328 - 10227209
Alignment:
Q  138 aaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaactgnnnnnnnaaaaaagttcatcaactgtaccgatggcttctt 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       |||||||||||||||||||||||||||||||||    
T  10227328 aaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaaccgttttttaaaaaaagttcatcaactgtaccgatggcttctt 10227229  T
Q  238 cttcactacttcttttgcct 257  Q
    ||||||||||||||||||||    
T  10227228 cttcactacttcttttgcct 10227209  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 28733209 - 28733266
Alignment:
Q  138 aaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaac 195  Q
    |||| ||| |||| |||||||||||||||||| |||||||||||||||| ||| ||||    
T  28733209 aaccaaaccgaactaaactaaaattaactgaatcattacattggttattaaacagaac 28733266  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 42476615 - 42476558
Alignment:
Q  138 aaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaac 195  Q
    ||||||||||||||||||||||||||||| ||| |||  ||| |||||||||| ||||    
T  42476615 aaccgaactgaaccaaactaaaattaactaaactattgtattagttattgaactgaac 42476558  T

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Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 109 - 195
Target Start/End: Complemental strand, 2737844 - 2737758
Alignment:
Q  109 taggggtgggcaaaaatatccaaaaactgaaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaac 195  Q
    |||||||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2737844 taggggtgggtaaaaatatctaaaaactgaaccgaaccgaaccaaattaaaattaactgaaccattacattggttattgaaccgaac 2737758  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 38372776 - 38372691
Alignment:
Q  110 aggggtgggcaaaaatatccaaaaactgaaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaac 195  Q
    ||||||||||||||||||  |||||  ||| ||||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||    
T  38372776 aggggtgggcaaaaatatttaaaaatcgaatcgaaccgaactaaactaaaattaactgaactattgcattggttattgaaccgaac 38372691  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 45065538 - 45065613
Alignment:
Q  109 taggggtgggcaaaaatatccaaaaactgaaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaa 189  Q
    ||||| ||||||||||||||||||||| |||||||||     ||||||||||||| ||||| |||||||||||||||||||    
T  45065538 tagggatgggcaaaaatatccaaaaaccgaaccgaac-----caaactaaaattagctgaatcattacattggttattgaa 45065613  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 39264726 - 39264775
Alignment:
Q  146 tgaaccaaactaaaattaactgaaccattacattggttattgaaccgaac 195  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  39264726 tgaaccaaactaaaattaaccgaaccattacattggttattgaactgaac 39264775  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 48997150 - 48997097
Alignment:
Q  138 aaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaacc 191  Q
    ||||||||||||||||| |||||||||| |||||| ||||||||||||| ||||    
T  48997150 aaccgaactgaaccaaattaaaattaaccgaaccactacattggttattaaacc 48997097  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 140
Target Start/End: Original strand, 39264674 - 39264707
Alignment:
Q  107 tctaggggtgggcaaaaatatccaaaaactgaac 140  Q
    ||||||||||||||||||||||||||||||||||    
T  39264674 tctaggggtgggcaaaaatatccaaaaactgaac 39264707  T

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Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 23757669 - 23757748
Alignment:
Q  114 gtgggcaaaaatatccaaaaactgaaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccga 193  Q
    |||| |||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  23757669 gtggacaaaaatatcaaaaaactgaaccgaaccgaaccaaactaaaattaattgaaccattacattggttattgaaccga 23757748  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 109 - 195
Target Start/End: Original strand, 12197380 - 12197469
Alignment:
Q  109 taggggtgggcaaaaatatccaaaaactgaaccgaactg---aaccaaactaaaattaactgaaccattacattggttattgaaccgaac 195  Q
    |||||||| ||||||||| |||||||| ||||||||| |   |||| ||| ||||||||| ||||||||||| |||||||||||||||||    
T  12197380 taggggtgagcaaaaataaccaaaaaccgaaccgaacggccaaaccgaaccaaaattaaccgaaccattacactggttattgaaccgaac 12197469  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 113 - 195
Target Start/End: Complemental strand, 23112158 - 23112076
Alignment:
Q  113 ggtgggcaaaaatatccaaaaactgaaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaac 195  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||| | |||||||||| |||||||||||||||||    
T  23112158 ggtgggcaaaaatatccaaaaactgaaccgaaccgaaccaaacgaaaattaattaaaccattacagtggttattgaaccgaac 23112076  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 37344564 - 37344621
Alignment:
Q  138 aaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaac 195  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  37344564 aaccgaactgaatcaaactaaaattaactgaatcattacattggttattgaaccgaac 37344621  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 139
Target Start/End: Original strand, 37344522 - 37344552
Alignment:
Q  109 taggggtgggcaaaaatatccaaaaactgaa 139  Q
    |||||||||||||||||||||||||||||||    
T  37344522 taggggtgggcaaaaatatccaaaaactgaa 37344552  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 50301813 - 50301894
Alignment:
Q  113 ggtgggcaaaaatatccaaaaactgaaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaac 195  Q
    ||||||||||||||||| |||| |  || ||||  || |||||||||||||||||||||||||||||||||||||| ||||||    
T  50301813 ggtgggcaaaaatatcctaaaagtagac-gaacaaaatcaaactaaaattaactgaaccattacattggttattgatccgaac 50301894  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 32862054 - 32862105
Alignment:
Q  140 ccgaactgaaccaaactaaaattaactgaaccattacattggttattgaacc 191  Q
    |||||||||||||||||||||||||||||| |||| ||||  ||||||||||    
T  32862054 ccgaactgaaccaaactaaaattaactgaatcattgcattatttattgaacc 32862105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 25638460 - 25638501
Alignment:
Q  109 taggggtgggcaaaaatatccaaaaactgaaccgaactgaac 150  Q
    |||||||||||||||||| |||||||||||||||||| ||||    
T  25638460 taggggtgggcaaaaataaccaaaaactgaaccgaaccgaac 25638501  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 10773480 - 10773523
Alignment:
Q  152 aaactaaaattaactgaaccattacattggttattgaaccgaac 195  Q
    |||||||||||||||||||||||  |||| ||||||||||||||    
T  10773480 aaactaaaattaactgaaccattttattgattattgaaccgaac 10773523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 53246 - 53294
Alignment:
Q  147 gaaccaaactaaaattaactgaaccattacattggttattgaaccgaac 195  Q
    |||||| |||||||||||| ||||||||| ||||||||| |||||||||    
T  53246 gaaccatactaaaattaaccgaaccattatattggttatcgaaccgaac 53294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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