View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0760_low_34 (Length: 337)

Name: NF0760_low_34
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0760_low_34
NF0760_low_34
[»] chr1 (3 HSPs)
chr1 (37-197)||(3324932-3325092)
chr1 (108-195)||(48315143-48315225)
chr1 (226-257)||(3324663-3324694)
[»] chr8 (4 HSPs)
chr8 (82-195)||(10227321-10227434)
chr8 (138-257)||(10227209-10227328)
chr8 (138-197)||(28733209-28733268)
chr8 (138-197)||(42476556-42476615)
[»] chr4 (6 HSPs)
chr4 (109-197)||(2737756-2737844)
chr4 (110-195)||(38372691-38372776)
chr4 (109-189)||(45065538-45065613)
chr4 (146-196)||(39264726-39264776)
chr4 (138-197)||(48997091-48997150)
chr4 (107-140)||(39264674-39264707)
[»] chr6 (1 HSPs)
chr6 (113-197)||(23112074-23112158)
[»] chr2 (2 HSPs)
chr2 (114-193)||(23757669-23757748)
chr2 (109-197)||(12197380-12197471)
[»] chr5 (2 HSPs)
chr5 (138-197)||(37344564-37344623)
chr5 (109-139)||(37344522-37344552)
[»] chr3 (4 HSPs)
chr3 (113-196)||(50301813-50301895)
chr3 (140-197)||(32862054-32862111)
chr3 (152-197)||(10773480-10773525)
chr3 (109-150)||(25638460-25638501)
[»] scaffold0064 (1 HSPs)
scaffold0064 (147-196)||(53246-53295)


Alignment Details
Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 37 - 197
Target Start/End: Complemental strand, 3325092 - 3324932
Alignment:
Q  37 tgttactcatggtactattgaatatnnnnnnnntgactactttgtgaattatgggcatgtgtctactgtctctaggggtgggcaaaaatatccaaaaact 136  Q
    |||||||||||||||||||||||||        |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |    
T  3325092 tgttactcatggtactattgaatataaaaaaaatgactactttgtgaattatgtgcatgtgtccactgtctctaggggtgggcaaaaatatccaaaaatt 3324993  T
Q  137 gaaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaaccg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3324992 gaaccgaactgaaccaaactaaaattaactgaaccattacattggttattaaaccgaaccg 3324932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 195
Target Start/End: Complemental strand, 48315225 - 48315143
Alignment:
Q  108 ctaggggtgggcaaaaatatccaaaaactgaaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaac 195  Q
    |||||| ||| ||||||||||||||||| ||| |||||     |||||||||||||||||||||||||||||| ||||| || |||||    
T  48315225 ctagggatggccaaaaatatccaaaaaccgaatcgaac-----caaactaaaattaactgaaccattacattgattattaaatcgaac 48315143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 257
Target Start/End: Complemental strand, 3324694 - 3324663
Alignment:
Q  226 cgatggcttcttcttcactacttcttttgcct 257  Q
    ||||||||||||||||||||||||||||||||    
T  3324694 cgatggcttcttcttcactacttcttttgcct 3324663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 82 - 195
Target Start/End: Complemental strand, 10227434 - 10227321
Alignment:
Q  82 gaattatgggcatgtgtctactgtctctaggggtgggcaaaaatatccaaaaactgaaccgaactgaaccaaactaaaattaactgaaccattacattgg 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10227434 gaattatgggcatgtgtctactgtctctaggggtgggcaaaaatatccaaaaactgaaccgaactgaaccaaactaaaattaactgaaccattacattgg 10227335  T
Q  182 ttattgaaccgaac 195  Q
    ||||| ||||||||    
T  10227334 ttattaaaccgaac 10227321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 138 - 257
Target Start/End: Complemental strand, 10227328 - 10227209
Alignment:
Q  138 aaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaaccgnnnnnnnaaaaaagctcatcaactgtaccgatggcttctt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||| |||||||||||||||||||||||||    
T  10227328 aaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaaccgttttttaaaaaaagttcatcaactgtaccgatggcttctt 10227229  T
Q  238 cttcactacttcttttgcct 257  Q
    ||||||||||||||||||||    
T  10227228 cttcactacttcttttgcct 10227209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 28733209 - 28733268
Alignment:
Q  138 aaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaaccg 197  Q
    |||| ||| |||| |||||||||||||||||| |||||||||||||||| ||| ||||||    
T  28733209 aaccaaaccgaactaaactaaaattaactgaatcattacattggttattaaacagaaccg 28733268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 42476615 - 42476556
Alignment:
Q  138 aaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaaccg 197  Q
    ||||||||||||||||||||||||||||| ||| |||  ||| |||||||||| ||||||    
T  42476615 aaccgaactgaaccaaactaaaattaactaaactattgtattagttattgaactgaaccg 42476556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 109 - 197
Target Start/End: Complemental strand, 2737844 - 2737756
Alignment:
Q  109 taggggtgggcaaaaatatccaaaaactgaaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaaccg 197  Q
    |||||||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2737844 taggggtgggtaaaaatatctaaaaactgaaccgaaccgaaccaaattaaaattaactgaaccattacattggttattgaaccgaaccg 2737756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 38372776 - 38372691
Alignment:
Q  110 aggggtgggcaaaaatatccaaaaactgaaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaac 195  Q
    ||||||||||||||||||  |||||  ||| ||||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||    
T  38372776 aggggtgggcaaaaatatttaaaaatcgaatcgaaccgaactaaactaaaattaactgaactattgcattggttattgaaccgaac 38372691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 45065538 - 45065613
Alignment:
Q  109 taggggtgggcaaaaatatccaaaaactgaaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaa 189  Q
    ||||| ||||||||||||||||||||| |||||||||     ||||||||||||| ||||| |||||||||||||||||||    
T  45065538 tagggatgggcaaaaatatccaaaaaccgaaccgaac-----caaactaaaattagctgaatcattacattggttattgaa 45065613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 39264726 - 39264776
Alignment:
Q  146 tgaaccaaactaaaattaactgaaccattacattggttattgaaccgaacc 196  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  39264726 tgaaccaaactaaaattaaccgaaccattacattggttattgaactgaacc 39264776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 48997150 - 48997091
Alignment:
Q  138 aaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaaccg 197  Q
    ||||||||||||||||| |||||||||| |||||| ||||||||||||| |||| |||||    
T  48997150 aaccgaactgaaccaaattaaaattaaccgaaccactacattggttattaaaccaaaccg 48997091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 140
Target Start/End: Original strand, 39264674 - 39264707
Alignment:
Q  107 tctaggggtgggcaaaaatatccaaaaactgaac 140  Q
    ||||||||||||||||||||||||||||||||||    
T  39264674 tctaggggtgggcaaaaatatccaaaaactgaac 39264707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 23112158 - 23112074
Alignment:
Q  113 ggtgggcaaaaatatccaaaaactgaaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaaccg 197  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||| | |||||||||| |||||||||||||||||||    
T  23112158 ggtgggcaaaaatatccaaaaactgaaccgaaccgaaccaaacgaaaattaattaaaccattacagtggttattgaaccgaaccg 23112074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 23757669 - 23757748
Alignment:
Q  114 gtgggcaaaaatatccaaaaactgaaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccga 193  Q
    |||| |||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  23757669 gtggacaaaaatatcaaaaaactgaaccgaaccgaaccaaactaaaattaattgaaccattacattggttattgaaccga 23757748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 12197380 - 12197471
Alignment:
Q  109 taggggtgggcaaaaatatccaaaaactgaaccgaactg---aaccaaactaaaattaactgaaccattacattggttattgaaccgaaccg 197  Q
    |||||||| ||||||||| |||||||| ||||||||| |   |||| ||| ||||||||| ||||||||||| |||||||||||||||||||    
T  12197380 taggggtgagcaaaaataaccaaaaaccgaaccgaacggccaaaccgaaccaaaattaaccgaaccattacactggttattgaaccgaaccg 12197471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 37344564 - 37344623
Alignment:
Q  138 aaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaaccg 197  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  37344564 aaccgaactgaatcaaactaaaattaactgaatcattacattggttattgaaccgaaccg 37344623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 139
Target Start/End: Original strand, 37344522 - 37344552
Alignment:
Q  109 taggggtgggcaaaaatatccaaaaactgaa 139  Q
    |||||||||||||||||||||||||||||||    
T  37344522 taggggtgggcaaaaatatccaaaaactgaa 37344552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 113 - 196
Target Start/End: Original strand, 50301813 - 50301895
Alignment:
Q  113 ggtgggcaaaaatatccaaaaactgaaccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaacc 196  Q
    ||||||||||||||||| |||| |  || ||||  || |||||||||||||||||||||||||||||||||||||| |||||||    
T  50301813 ggtgggcaaaaatatcctaaaagtagac-gaacaaaatcaaactaaaattaactgaaccattacattggttattgatccgaacc 50301895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 32862054 - 32862111
Alignment:
Q  140 ccgaactgaaccaaactaaaattaactgaaccattacattggttattgaaccgaaccg 197  Q
    |||||||||||||||||||||||||||||| |||| ||||  |||||||||| |||||    
T  32862054 ccgaactgaaccaaactaaaattaactgaatcattgcattatttattgaaccaaaccg 32862111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 10773480 - 10773525
Alignment:
Q  152 aaactaaaattaactgaaccattacattggttattgaaccgaaccg 197  Q
    |||||||||||||||||||||||  |||| ||||||||||||||||    
T  10773480 aaactaaaattaactgaaccattttattgattattgaaccgaaccg 10773525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 25638460 - 25638501
Alignment:
Q  109 taggggtgggcaaaaatatccaaaaactgaaccgaactgaac 150  Q
    |||||||||||||||||| |||||||||||||||||| ||||    
T  25638460 taggggtgggcaaaaataaccaaaaactgaaccgaaccgaac 25638501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 53246 - 53295
Alignment:
Q  147 gaaccaaactaaaattaactgaaccattacattggttattgaaccgaacc 196  Q
    |||||| |||||||||||| ||||||||| ||||||||| ||||||||||    
T  53246 gaaccatactaaaattaaccgaaccattatattggttatcgaaccgaacc 53295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3139 times since January 2019
Visitors: 4805