View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0760_low_35 (Length: 333)

Name: NF0760_low_35
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0760_low_35
NF0760_low_35
[»] chr4 (5 HSPs)
chr4 (1-210)||(52053288-52053483)
chr4 (210-309)||(52053126-52053225)
chr4 (83-124)||(35212745-35212786)
chr4 (83-123)||(7214540-7214580)
chr4 (92-124)||(40742591-40742623)
[»] chr8 (7 HSPs)
chr8 (83-126)||(11815827-11815870)
chr8 (83-116)||(12606847-12606880)
chr8 (83-124)||(12985392-12985433)
chr8 (83-128)||(34201064-34201109)
chr8 (83-123)||(10170404-10170444)
chr8 (83-123)||(14227223-14227263)
chr8 (83-123)||(37225761-37225801)
[»] chr7 (3 HSPs)
chr7 (83-128)||(9483380-9483425)
chr7 (83-125)||(3520360-3520402)
chr7 (91-125)||(23128687-23128721)
[»] chr5 (4 HSPs)
chr5 (83-124)||(9449469-9449510)
chr5 (83-125)||(32630753-32630795)
chr5 (83-116)||(23012426-23012459)
chr5 (80-128)||(41558698-41558746)
[»] chr3 (1 HSPs)
chr3 (83-124)||(46191363-46191404)
[»] chr1 (3 HSPs)
chr1 (83-124)||(17080899-17080940)
chr1 (83-128)||(29230061-29230106)
chr1 (84-125)||(47126265-47126306)
[»] chr6 (2 HSPs)
chr6 (84-124)||(17422274-17422314)
chr6 (86-122)||(1893390-1893426)
[»] scaffold0022 (1 HSPs)
scaffold0022 (91-123)||(90844-90876)
[»] chr2 (1 HSPs)
chr2 (84-116)||(27084270-27084302)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 52053483 - 52053288
Alignment:
Q  1 ccataattgaaatccaagcttaaccatctgcaaaaccaaattcaagctaatgagaaatcactaaccactaatccatgataatttacattcaattatatga 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52053483 ccataattgaaatccaagctcaaccatctgcaaaaccaaattcaagctaatgagaaatcactaaccactaatccatgataatttacattcaattatatga 52053384  T
Q  101 ttttctcaaattattattggtgtcaatgcattcgtgttgtgtatgtgcttgtgacaatgcttcaaagctatgaaccattgacacggacaccaggctcaac 200  Q
    ||              ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  52053383 tt--------------ttggtgtcaatgcattcgtgttgtgtatgtgtttgtgacaatgcttcaaagctatgaaccattgacacggacaccaggcgcaac 52053298  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 210 - 309
Target Start/End: Complemental strand, 52053225 - 52053126
Alignment:
Q  210 agacaataaagtttttctcaaattattatcgatgttgatgtgtttgtaacaatgcttgaaagagaatagagtgaagagaaaccatttacctcgttggttt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  52053225 agacaataaagtttttctcaaattattatcgatgttgatgtgtttgtaacaatgcttcaaagacaatagagtgaagagaaaccatttacctcgttggttt 52053126  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 35212745 - 35212786
Alignment:
Q  83 ttacattcaattatatgattttctcaaattattattggtgtc 124  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  35212745 ttacattcaattatttaattttctcaaattattattggtgtc 35212786  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 7214540 - 7214580
Alignment:
Q  83 ttacattcaattatatgattttctcaaattattattggtgt 123  Q
    ||||||| |||||| ||||||||||||||||||| ||||||    
T  7214540 ttacattaaattatgtgattttctcaaattattagtggtgt 7214580  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 40742623 - 40742591
Alignment:
Q  92 attatatgattttctcaaattattattggtgtc 124  Q
    ||||||||||||||||||||||||| |||||||    
T  40742623 attatatgattttctcaaattattaatggtgtc 40742591  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 11815870 - 11815827
Alignment:
Q  83 ttacattcaattatatgattttctcaaattattattggtgtcaa 126  Q
    |||||||||||||||  |||||||||||||||||||||||||||    
T  11815870 ttacattcaattataacattttctcaaattattattggtgtcaa 11815827  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 12606847 - 12606880
Alignment:
Q  83 ttacattcaattatatgattttctcaaattatta 116  Q
    ||||||| ||||||||||||||||||||||||||    
T  12606847 ttacattgaattatatgattttctcaaattatta 12606880  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 12985433 - 12985392
Alignment:
Q  83 ttacattcaattatatgattttctcaaattattattggtgtc 124  Q
    ||||||| |||||| |||||||||||||||||||| ||||||    
T  12985433 ttacattgaattatgtgattttctcaaattattataggtgtc 12985392  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 34201064 - 34201109
Alignment:
Q  83 ttacattcaattatatgattttctcaaattattattggtgtcaatg 128  Q
    ||||||| |||||| | ||||||||||||||||||| |||||||||    
T  34201064 ttacattgaattatgtcattttctcaaattattattagtgtcaatg 34201109  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 10170404 - 10170444
Alignment:
Q  83 ttacattcaattatatgattttctcaaattattattggtgt 123  Q
    |||||||||||||  | ||||||||||||||||||||||||    
T  10170404 ttacattcaattaatttattttctcaaattattattggtgt 10170444  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 14227263 - 14227223
Alignment:
Q  83 ttacattcaattatatgattttctcaaattattattggtgt 123  Q
    ||||||| |||||| | ||||||||||||||||||||||||    
T  14227263 ttacattgaattatgttattttctcaaattattattggtgt 14227223  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 37225761 - 37225801
Alignment:
Q  83 ttacattcaattatatgattttctcaaattattattggtgt 123  Q
    ||||||| |||||| | ||||||||||||||||||||||||    
T  37225761 ttacattgaattatgttattttctcaaattattattggtgt 37225801  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 9483425 - 9483380
Alignment:
Q  83 ttacattcaattatatgattttctcaaattattattggtgtcaatg 128  Q
    ||||||||||||||   |||||||||||||||||||||||||||||    
T  9483425 ttacattcaattattctattttctcaaattattattggtgtcaatg 9483380  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 3520360 - 3520402
Alignment:
Q  83 ttacattcaattatatgattttctcaaattattattggtgtca 125  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||    
T  3520360 ttacattgaattatatgattttctcaaatgattatcggtgtca 3520402  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 23128687 - 23128721
Alignment:
Q  91 aattatatgattttctcaaattattattggtgtca 125  Q
    ||||||||| |||||||||||||||||||||||||    
T  23128687 aattatatggttttctcaaattattattggtgtca 23128721  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 9449510 - 9449469
Alignment:
Q  83 ttacattcaattatatgattttctcaaattattattggtgtc 124  Q
    ||||||| |||||| |||||||||||||||||||||||||||    
T  9449510 ttacattgaattatgtgattttctcaaattattattggtgtc 9449469  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 32630753 - 32630795
Alignment:
Q  83 ttacattcaattatatgattttctcaaattattattggtgtca 125  Q
    ||||||| |||||||| |||||||||||||||||| |||||||    
T  32630753 ttacattgaattatataattttctcaaattattatcggtgtca 32630795  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 23012426 - 23012459
Alignment:
Q  83 ttacattcaattatatgattttctcaaattatta 116  Q
    ||||||| ||||||||||||||||||||||||||    
T  23012426 ttacattaaattatatgattttctcaaattatta 23012459  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 41558698 - 41558746
Alignment:
Q  80 aatttacattcaattatatgattttctcaaattattattggtgtcaatg 128  Q
    ||||||| || |||||| | ||||||||||||||||||| |||||||||    
T  41558698 aatttactttgaattatgtcattttctcaaattattatttgtgtcaatg 41558746  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 46191363 - 46191404
Alignment:
Q  83 ttacattcaattatatgattttctcaaattattattggtgtc 124  Q
    ||||||| |||||| |||||||||||||||||||||||||||    
T  46191363 ttacatttaattatgtgattttctcaaattattattggtgtc 46191404  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 17080899 - 17080940
Alignment:
Q  83 ttacattcaattatatgattttctcaaattattattggtgtc 124  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  17080899 ttacattcaattatgttattttctcaaattattattggtgtc 17080940  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 29230106 - 29230061
Alignment:
Q  83 ttacattcaattatatgattttctcaaattattattggtgtcaatg 128  Q
    |||||||||||||| | |||||||||||||||||  ||||||||||    
T  29230106 ttacattcaattatgtcattttctcaaattattaccggtgtcaatg 29230061  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 47126306 - 47126265
Alignment:
Q  84 tacattcaattatatgattttctcaaattattattggtgtca 125  Q
    ||||||||||||| | ||||||| ||||||||||||||||||    
T  47126306 tacattcaattatttcattttcttaaattattattggtgtca 47126265  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 17422274 - 17422314
Alignment:
Q  84 tacattcaattatatgattttctcaaattattattggtgtc 124  Q
    ||||||||||||||| |||||||||||||||||| ||||||    
T  17422274 tacattcaattatatcattttctcaaattattatcggtgtc 17422314  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 1893390 - 1893426
Alignment:
Q  86 cattcaattatatgattttctcaaattattattggtg 122  Q
    |||| |||||||| |||||||||||||||||||||||    
T  1893390 cattgaattatatcattttctcaaattattattggtg 1893426  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 90876 - 90844
Alignment:
Q  91 aattatatgattttctcaaattattattggtgt 123  Q
    |||||||||||||||||||||||||| ||||||    
T  90876 aattatatgattttctcaaattattaatggtgt 90844  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 27084302 - 27084270
Alignment:
Q  84 tacattcaattatatgattttctcaaattatta 116  Q
    |||||| ||||||||||||||||||||||||||    
T  27084302 tacattgaattatatgattttctcaaattatta 27084270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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