View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0760_low_39 (Length: 313)
Name: NF0760_low_39
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0760_low_39 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 218 - 313
Target Start/End: Original strand, 29606843 - 29606938
Alignment:
| Q |
218 |
caaagaaacaccggcaccagcacctacacacaaaaagaaagcaccagcacccgcaccagacaaagaaacaccggcaccagcacctacacacaaaaa |
313 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29606843 |
caaagaagcaccagcaccagcacctacacacaaaaagaaagcaccagcacccgcaccagacaaagaaacaccggcaccagcacctacacacaaaaa |
29606938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 29606740 - 29606824
Alignment:
| Q |
55 |
ctataccacctgtttcacttccaccattaccattaccaccagcttctaaaccaccaaaggtatccccagcacctgcaaaggttcc |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29606740 |
ctataccacctgtttcacttccaccattaccattaccaccagcttctaaaccaccaaaggtatccccagcacctgcaaaggttcc |
29606824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 256
Target Start/End: Original strand, 29606894 - 29606941
Alignment:
| Q |
209 |
cgcaccagacaaagaaacaccggcaccagcacctacacacaaaaagaa |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29606894 |
cgcaccagacaaagaaacaccggcaccagcacctacacacaaaaagaa |
29606941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 29606828 - 29606878
Alignment:
| Q |
263 |
agcacccgcaccagacaaagaaacaccggcaccagcacctacacacaaaaa |
313 |
Q |
| |
|
|||||| ||||| | ||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
29606828 |
agcaccagcaccggccaaagaagcaccagcaccagcacctacacacaaaaa |
29606878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2611 times since January 2019
Visitors: 4796