View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0760_low_4 (Length: 653)
Name: NF0760_low_4
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0760_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 80 - 641
Target Start/End: Original strand, 6351927 - 6352487
Alignment:
| Q |
80 |
aatatacaaaggtgtagctaaaatgtgatggctcaggagtagggctccgtaattttgtgtgaattacttcaaataatttagaatgaatagtaatggaaag |
179 |
Q |
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| T |
6351927 |
aatatacaaaggtgtaactaaaatgtgatggctcaggagtagggctccgtaattttgtgtgaattacttcaaataatttagaatgaatagtaatggaaag |
6352026 |
T |
|
| Q |
180 |
tggagtatgtaatcgatgtgatttaccaacacagcaagaattacaaaaaccataaagttctttactagcaattggtatattacagatggaaattacattt |
279 |
Q |
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| T |
6352027 |
tggagtatgtaatcgatgtgatttaccaacacagcaagaattacaaaaaccataaagttctttactagcaattggtatattacagatggaaattacattt |
6352126 |
T |
|
| Q |
280 |
ttgacaaattgaccattagcatggcctagctagcataccaaatggatttacttgataccaaagtagaatcatatgttgcattttattacaaatgacagaa |
379 |
Q |
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| T |
6352127 |
ttgacaa-ttgaccattagcatggcctagctagcataccaaatggatttacttgataccaaagtagaatcatagtttgcattttattacaaatgacagaa |
6352225 |
T |
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| Q |
380 |
ttattatttgacgtaacgcctaaagtataaggagatgaatgcactgagagcttagtcacatggcaggaagatcctttgataacattgagatgtgagaagt |
479 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6352226 |
ttattatttgacgtaacgcctaaagtataaggagatgaatgcagtgagagcttagtcacatggcaggaagatcctttgataacattgagatgtgagaagt |
6352325 |
T |
|
| Q |
480 |
atacaagccattgcacctagggatccacgagtgtttgctttgtggcgtgtgatttcacaaacacactgcattattcttagcaaatttagacattgacatc |
579 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6352326 |
atacaagccattgcacctagggatccacgagcgcttgctttgttgcgtgtgatttcacaaacacactgcattattcttagcaaatttagacattgacatc |
6352425 |
T |
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| Q |
580 |
aaatttttggtaaaagaagcaacatgaagataaagaagttgatttaaataacgcagaaatat |
641 |
Q |
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| T |
6352426 |
aaatttttggtaaaagaagcaacatgaagataaagaagttgatttaaataacacagaaatat |
6352487 |
T |
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