View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0760_low_41 (Length: 310)
Name: NF0760_low_41
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0760_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 6 - 283
Target Start/End: Complemental strand, 39251246 - 39250969
Alignment:
| Q |
6 |
agcagcacagacaatttgatgcagaaaacatacaagacaacaagaagaacatataacgagataaaaacttggagtttgtgattttaccttaggaggtatt |
105 |
Q |
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| T |
39251246 |
agcagcacagacaatttgatgcagaaaacatacaagacaacaagaagaacatataacgagataaaaacttggagtttgtgattttaccttaggaggtatt |
39251147 |
T |
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| Q |
106 |
taggttcactgtgaccctgaatcagacccagacgatgaggagctatcactatcagaatctgcaaaagcacattattatcgaacattaaatttgaataaaa |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39251146 |
taggttcactgtgaccctgaatcagacccagacgatgaggagctatcactatcagaatctgcaaaagcacattattatcaaacattaaatttgaataaaa |
39251047 |
T |
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| Q |
206 |
gtaaaagccaagttgaccttgtataaccataaattatgggacagatatctattaaataattatttaatataccacttg |
283 |
Q |
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| T |
39251046 |
gtaaaagccaggttgaccttgtataaccataaattatgggacagatatctattaaataattatttaatataccacttg |
39250969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 9 - 287
Target Start/End: Complemental strand, 39262320 - 39262050
Alignment:
| Q |
9 |
agcacagacaatttgatgcagaaaacatacaagacaacaagaagaacatataacgagataaaaac-ttggagtttgtgattttacctta--ggaggtatt |
105 |
Q |
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| T |
39262320 |
agcacagacaatttgatgaagaaaacatacaagacaacaagaagagcatataacgagataaaaaaattgaagtttgtgattttaccttacgggaggtatt |
39262221 |
T |
|
| Q |
106 |
taggttcactgtgaccctgaatcagacccagacgatgaggagctatcactatcagaatctgcaaaagcacattattatcgaacattaaatttgaataaaa |
205 |
Q |
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| T |
39262220 |
taggttcattgtgaccctgcatcagacccggatgctgaggaactatcactatcagaatctgccaaagcacattaatatcagatatt-----------aaa |
39262132 |
T |
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| Q |
206 |
gtaaaagccaagttgaccttgtataaccataaattatgggacagatatctattaaataattatttaatataccacttgatga |
287 |
Q |
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| T |
39262131 |
gtataagcgagattgaccttgtataacaataaattatgggacagatatctattaaataattatttactataccactagatga |
39262050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 4709840 - 4709762
Alignment:
| Q |
11 |
cacagacaatttgatgcagaaaacatacaagacaacaagaagaacatataacgagataaaaacttggagtttgtgatttt |
90 |
Q |
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| T |
4709840 |
cacaaacaatttgatgcagaaaatatacaagacaccaggaagagcatataatgagat-aaaatttggagtttgtgatttt |
4709762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 30813712 - 30813659
Alignment:
| Q |
116 |
gtgaccctgaatcagacccagacgatgaggagctatcactatcagaatctgcaa |
169 |
Q |
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||||||||| |||||| ||||| |||||||| || ||||||||||||||||||| |
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| T |
30813712 |
gtgaccctgcatcagatccagaggatgaggaactgtcactatcagaatctgcaa |
30813659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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