View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0760_low_42 (Length: 299)
Name: NF0760_low_42
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0760_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 7 - 282
Target Start/End: Complemental strand, 27065943 - 27065668
Alignment:
| Q |
7 |
gaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgccatttgcatcc |
106 |
Q |
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| T |
27065943 |
gaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgccatttgcatct |
27065844 |
T |
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| Q |
107 |
tctaagttgaatgagatgaagcaggtttttaaggtgtccgagaattcttcgatgaacaaaatgatggtggatgcgttgagtgagtgcgagagggcgccga |
206 |
Q |
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| T |
27065843 |
tctaagttgaatgagatgaagcaagttttcaaggtgtccgagaattcttcgatgaataagatgatggtggatgcgttgagtgagtgcgagagggcgccga |
27065744 |
T |
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| Q |
207 |
gtgtaggtgaaacgaagcgttgtgtgggttctcttgaggatatgattgattttgcaacttctgttttgggtcacag |
282 |
Q |
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| T |
27065743 |
gtgtaggtgaaacgaagcgttgtgtgggttctcttgaggatatgattgattttgcaacttctgttttgggtcacag |
27065668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 20 - 276
Target Start/End: Complemental strand, 27079647 - 27079391
Alignment:
| Q |
20 |
gttatgcctatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgccatttgcatcctctaagttgaatg |
119 |
Q |
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| T |
27079647 |
gttatgcctatgccggatattaaggataaattaccgccaaggtcgtttttaccacgtaccattttgaccaaattaccctttgcatcttctaagttgaatg |
27079548 |
T |
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| Q |
120 |
agatgaagcaggtttttaaggtgtccgagaattcttcgatgaacaaaatgatggtggatgcgttgagtgagtgcgagagggcgccgagtgtaggtgaaac |
219 |
Q |
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| T |
27079547 |
agttgaagcaagtttttaaggtgtctgagaattcctcgatggataagatgatagtggactcattgggtgagtgtgagagggcaccgagtatgggtgagac |
27079448 |
T |
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| Q |
220 |
gaagcgttgtgtgggttctcttgaggatatgattgattttgcaacttctgttttggg |
276 |
Q |
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| T |
27079447 |
aaagcgttgtgttggttcacttgaggatatgattgactttgcaacttcagttttggg |
27079391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 7 - 277
Target Start/End: Complemental strand, 27053501 - 27053231
Alignment:
| Q |
7 |
gaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgccatttgcatcc |
106 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||| ||||| || |||||||||||||| ||||||||||||| ||||||||| |||||||| |
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| T |
27053501 |
gaaggaagggactgttatgcctatgccagatacaagggataagttaccacctaggtcgtttttgccacgttccattttgatcaaattgccctttgcatct |
27053402 |
T |
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| Q |
107 |
tctaagttgaatgagatgaagcaggtttttaaggtgtccgagaattcttcgatgaacaaaatgatggtggatgcgttgagtgagtgcgagagggcgccga |
206 |
Q |
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||||||||||| | |||||||| ||||| |||||||| || ||||| | ||| | || ||||| ||||| | ||||||||||| || || ||||| | |
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| T |
27053401 |
tctaagttgaacaatatgaagcaagttttcaaggtgtctgaaaattcctttatggaaaagatgatagtggactcattgagtgagtgtgaaagagcgccaa |
27053302 |
T |
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| Q |
207 |
gtgtaggtgaaacgaagcgttgtgtgggttctcttgaggatatgattgattttgcaacttctgttttgggt |
277 |
Q |
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| T |
27053301 |
gtaaaggtgagatcaagcgttgtgtaggttcgcttgaggacatgattgactttgcaacttctattttgggt |
27053231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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