View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0760_low_43 (Length: 296)

Name: NF0760_low_43
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0760_low_43
NF0760_low_43
[»] chr3 (8 HSPs)
chr3 (59-296)||(33270310-33270547)
chr3 (61-148)||(39751605-39751692)
chr3 (205-291)||(4844495-4844581)
chr3 (205-291)||(4870191-4870277)
chr3 (203-254)||(14186690-14186741)
chr3 (203-254)||(44069801-44069852)
chr3 (217-286)||(13808881-13808950)
chr3 (205-254)||(27093345-27093394)
[»] chr5 (4 HSPs)
chr5 (59-148)||(25707148-25707237)
chr5 (203-290)||(16773814-16773901)
chr5 (202-291)||(14495786-14495875)
chr5 (205-291)||(29692370-29692456)
[»] chr2 (9 HSPs)
chr2 (68-127)||(34662111-34662170)
chr2 (203-273)||(11251111-11251181)
chr2 (203-287)||(12086111-12086195)
chr2 (231-290)||(12994386-12994445)
chr2 (203-286)||(21213780-21213863)
chr2 (205-286)||(19244120-19244201)
chr2 (213-286)||(37480086-37480159)
chr2 (205-286)||(42327379-42327460)
chr2 (205-286)||(42602565-42602646)
[»] chr7 (5 HSPs)
chr7 (205-286)||(22760874-22760955)
chr7 (217-286)||(43215195-43215264)
chr7 (203-254)||(2882993-2883044)
chr7 (212-282)||(18056766-18056836)
chr7 (205-286)||(26459394-26459475)
[»] chr1 (7 HSPs)
chr1 (205-266)||(51281382-51281443)
chr1 (203-281)||(12587286-12587363)
chr1 (204-254)||(19940855-19940905)
chr1 (205-290)||(34228881-34228965)
chr1 (205-286)||(37400285-37400366)
chr1 (213-286)||(19528319-19528392)
chr1 (205-254)||(51814537-51814586)
[»] chr8 (5 HSPs)
chr8 (203-290)||(968369-968456)
chr8 (203-266)||(28787478-28787541)
chr8 (203-273)||(6536544-6536614)
chr8 (203-280)||(23361631-23361708)
chr8 (205-273)||(33017238-33017306)
[»] chr4 (5 HSPs)
chr4 (203-273)||(7949436-7949506)
chr4 (205-254)||(4249220-4249269)
chr4 (205-286)||(5795393-5795474)
chr4 (205-286)||(37109335-37109416)
chr4 (217-277)||(23377976-23378036)
[»] scaffold0517 (1 HSPs)
scaffold0517 (205-286)||(7710-7791)
[»] chr6 (5 HSPs)
chr6 (202-286)||(12234488-12234572)
chr6 (203-286)||(33549115-33549198)
chr6 (212-278)||(6385881-6385947)
chr6 (205-286)||(31622975-31623056)
chr6 (202-254)||(28841457-28841509)
[»] scaffold0258 (1 HSPs)
scaffold0258 (203-286)||(15305-15388)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 59 - 296
Target Start/End: Original strand, 33270310 - 33270547
Alignment:
Q  59 agctgttgcagaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaatccacaagaaatcccaacctgcagcagatta 158  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33270310 agctgctgcagaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaatccacaagaaatcccaacctgcagcagatta 33270409  T
Q  159 aattaatcattcaatctatacatttaaaagaaaattaacagtttctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttaga 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33270410 aattaatcattcaatctatacatttaaaagaaaattaacagttttcaaattgccaccggagagaatgaaacctgagacctttaggtggaacacacttaga 33270509  T
Q  259 ggtcccaagtcaataacaccagaccaactcaaaatcca 296  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  33270510 ggtcccaagtcaataccaccagaccaacccaaaatcca 33270547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 39751692 - 39751605
Alignment:
Q  61 ctgttgcagaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaatccacaagaaatcccaacctg 148  Q
    |||||| ||||||||||  ||||| || ||||| |  ||||| |||| |||||||||||||| |||||||||||| || |||||||||    
T  39751692 ctgttgaagaccaatcacaatggcagctcctgctacaaatccaacaattgcagcatgtgacagaaaatccacaaggaaccccaacctg 39751605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 4844495 - 4844581
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaactcaaa 291  Q
    |||||| |||||||||||||  | ||||||||||  ||| ||||||||||   || ||||||||||||| |||||||||||| ||||    
T  4844495 aaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaa 4844581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 4870191 - 4870277
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaactcaaa 291  Q
    |||||| |||||||||||||  | ||||||||||  ||| ||||||||||   || ||||||||||||| |||||||||||| ||||    
T  4870191 aaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaa 4870277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 14186741 - 14186690
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacact 254  Q
    |||||||| |||||||||||||  ||||||||||||| ||| ||||||||||    
T  14186741 ctaaattgacaccggagagaatcgaacctgagaccttgaggaggagcacact 14186690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 44069852 - 44069801
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacact 254  Q
    |||||||| ||||||| ||||| |||||||||||||| ||| ||||||||||    
T  44069852 ctaaattggcaccggaaagaatcaaacctgagaccttgaggaggagcacact 44069801  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 13808881 - 13808950
Alignment:
Q  217 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaac 286  Q
    ||||||||  ||||||||||||  ||| ||||||||||   || |||||||||||||| |||||||||||    
T  13808881 gagagaattgaacctgagacctagaggaggagcacactgccagatcccaagtcaataagaccagaccaac 13808950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 27093345 - 27093394
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacact 254  Q
    |||||| |||| |||||||| |||||||||||||| ||| ||||||||||    
T  27093345 aaattggcaccagagagaatcaaacctgagaccttgaggaggagcacact 27093394  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 25707148 - 25707237
Alignment:
Q  59 agctgttgcagaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaatccacaagaaatcccaacctg 148  Q
    ||||| || |||||||| ||||| ||||| |||||||||||||| || |||||||||||||| | ||||||||||||||| |||||||||    
T  25707148 agctgctgaagaccaataatgattgctgctcctgccatgaatccaactagtgcagcatgtgaaagaaaatccacaagaaaacccaacctg 25707237  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 16773901 - 16773814
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaactcaa 290  Q
    |||||||| || | ||||||||  ||||||||||||  ||| ||||||||||   |||||||||||||||| ||||||||||||||||    
T  16773901 ctaaattggcatcagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagaccaactcaa 16773814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 14495786 - 14495875
Alignment:
Q  202 tctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaactcaaa 291  Q
    ||||||||| || |||||||||| ||| |||||||||  ||| ||||||||||   || ||||||||||||| |||||||||||| ||||    
T  14495786 tctaaattggcatcggagagaatcaaatctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaa 14495875  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 29692370 - 29692456
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaactcaaa 291  Q
    |||||| || |||||||||| ||||||||||| || ||| ||||||||||   || ||||||  ||||| |||||||||||| ||||    
T  29692370 aaattggcatcggagagaattaaacctgagactttgaggaggagcacactcccagatcccaatccaataccaccagaccaacccaaa 29692456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 34662111 - 34662170
Alignment:
Q  68 agaccaatcatgatggctgcacctgccatgaatcctacaagtgcagcatgtgacaaaaaa 127  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  34662111 agaccaatcaagatggctgcacctgccataaatcctacaagtgcagcatgtgataaaaaa 34662170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 11251181 - 11251111
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaata 273  Q
    |||||||| |||| |||||||| |||||||||||||| ||| |||||||||||  | |||||||| |||||    
T  11251181 ctaaattgacaccagagagaatcaaacctgagaccttgaggaggagcacacttccaagtcccaagccaata 11251111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 287
Target Start/End: Original strand, 12086111 - 12086195
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaact 287  Q
    |||||||  |||||||| ||||  |||| |||||||| ||| |||||||||||  |||||||||| ||||| |||||| ||||||    
T  12086111 ctaaattagcaccggagggaatcgaacccgagaccttgaggaggagcacacttccaggtcccaagccaataccaccaggccaact 12086195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 12994386 - 12994445
Alignment:
Q  231 tgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaactcaa 290  Q
    ||||||||| ||| ||||||||||   |||||||||||||||| ||| ||||||||||||    
T  12994386 tgagaccttaaggaggagcacactcccaggtcccaagtcaataccactagaccaactcaa 12994445  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 21213863 - 21213780
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaac 286  Q
    |||||||| |||||| ||||||  ||||||||||||  ||| ||| ||||||   |||||||||| ||||| ||||||||||||    
T  21213863 ctaaattggcaccggggagaatcgaacctgagacctcaaggaggaacacactcccaggtcccaagccaataccaccagaccaac 21213780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 19244201 - 19244120
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaac 286  Q
    |||||| |||| ||||||||  |||||||||||||  || ||||||||||   |||||||||||||||| ||  ||||||||    
T  19244201 aaattggcaccagagagaatcgaacctgagaccttggggaggagcacactctcaggtcccaagtcaataccagtagaccaac 19244120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 37480159 - 37480086
Alignment:
Q  213 accggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaac 286  Q
    ||||| ||||||  ||||||||||||| ||| ||||||||||   |||||||||| ||||| |||||| |||||    
T  37480159 accggggagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccaccaggccaac 37480086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 42327379 - 42327460
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaac 286  Q
    |||||| ||||| |||||||  ||||||||||||| ||| ||||||||||   |||||||||| ||||| ||| || |||||    
T  42327379 aaattggcaccgaagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaac 42327460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 42602646 - 42602565
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaac 286  Q
    |||||| ||||||||||||| |||||| ||||||| ||  ||||||||||   |||||||||| ||||| ||| || |||||    
T  42602646 aaattggcaccggagagaatcaaacctaagaccttgagaaggagcacactcccaggtcccaagccaataccactaggccaac 42602565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 22760955 - 22760874
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaac 286  Q
    |||||| || ||| ||||||  ||||||||||||| ||| ||||||||||   |||||||||||||||| ||||||||||||    
T  22760955 aaattggcatcggggagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaac 22760874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 43215264 - 43215195
Alignment:
Q  217 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaac 286  Q
    ||||||||  ||||||||||||| ||| ||||||||||  ||||||||||| ||||| ||| ||||||||    
T  43215264 gagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccactagaccaac 43215195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 2883044 - 2882993
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacact 254  Q
    ||||||||||||| ||||||||  ||||||||||||| ||| ||||||||||    
T  2883044 ctaaattgccaccagagagaattgaacctgagaccttgaggaggagcacact 2882993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 282
Target Start/End: Original strand, 18056766 - 18056836
Alignment:
Q  212 caccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagac 282  Q
    |||||| ||||||  ||||||||||||| ||| ||||||||||  || | |||||||||||| ||||||||    
T  18056766 caccggggagaatcgaacctgagaccttcaggaggagcacactccgaagacccaagtcaataccaccagac 18056836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 26459394 - 26459475
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaac 286  Q
    |||||| |||| ||||||||  ||||||||||||| ||| ||||||||||   |||||||||| ||||| ||| || |||||    
T  26459394 aaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaac 26459475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 51281443 - 51281382
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaa 266  Q
    |||||| | ||||||||||| |||||||||||||| ||| ||||||||||| ||||||||||    
T  51281443 aaattggcgccggagagaatcaaacctgagaccttgaggaggagcacactttgaggtcccaa 51281382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 12587363 - 12587286
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccaga 281  Q
    ||||||||| ||||||||||||  ||||||||||||  ||| |||||||||| | || ||||||||||||| |||||||    
T  12587363 ctaaattgc-accggagagaatcgaacctgagacctcgaggaggagcacactcacagatcccaagtcaatatcaccaga 12587286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 19940855 - 19940905
Alignment:
Q  204 taaattgccaccggagagaatgaaacctgagacctttaggtggagcacact 254  Q
    ||||||| ||||||||||||| |||||||||||||| ||| ||||||||||    
T  19940855 taaattggcaccggagagaatcaaacctgagaccttaaggaggagcacact 19940905  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 34228965 - 34228881
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaactcaa 290  Q
    |||||| |||||||||||||  ||||||||||||| | | ||| ||||||  ||||||||||| ||| | ||||||||||||||||    
T  34228965 aaattggcaccggagagaatccaacctgagaccttga-gaggaacacactccgaggtcccaagccaacaccaccagaccaactcaa 34228881  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 37400366 - 37400285
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaac 286  Q
    |||||| ||||||| |||||  ||| ||||||||| ||| |||||||||||  ||||| |||| ||||| ||||||||||||    
T  37400366 aaattggcaccggatagaatcgaacttgagaccttaaggaggagcacactttcaggtctcaagccaataccaccagaccaac 37400285  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 19528319 - 19528392
Alignment:
Q  213 accggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaac 286  Q
    ||||| ||||||  ||||||||||||| ||| |||||||||| | || ||||||| ||||| |||||| |||||    
T  19528319 accggggagaatcgaacctgagaccttgaggaggagcacactcatagatcccaagccaataccaccaggccaac 19528392  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 51814586 - 51814537
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacact 254  Q
    |||||| |||||||||||||  ||||||||||||| ||| ||||||||||    
T  51814586 aaattggcaccggagagaatcgaacctgagaccttgaggaggagcacact 51814537  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 968456 - 968369
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaactcaa 290  Q
    |||||||| || ||||||||||  ||||||||||||  ||| ||||||||||   |||||||||| ||||| |||||| |||||||||    
T  968456 ctaaattggcatcggagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccaggccaactcaa 968369  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 28787478 - 28787541
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaa 266  Q
    |||||||| ||| || |||||| |||||||||||||| ||| |||||||||||  |||||||||    
T  28787478 ctaaattggcactggggagaatcaaacctgagaccttgaggaggagcacacttgaaggtcccaa 28787541  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 6536614 - 6536544
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaata 273  Q
    |||||||| |||| ||||||||  ||||||||||||| ||| ||||||||||   |||||||||| |||||    
T  6536614 ctaaattggcaccagagagaattgaacctgagaccttgaggaggagcacactcctaggtcccaagccaata 6536544  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 23361631 - 23361708
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccag 280  Q
    |||||||| |||| ||||||||  ||||||||||||| ||| ||||||||||   |  ||||||||||||| ||||||    
T  23361631 ctaaattgacaccagagagaattgaacctgagaccttgaggaggagcacactcccatatcccaagtcaataccaccag 23361708  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 33017306 - 33017238
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaata 273  Q
    |||||| |||| ||||||||  ||||||||||||| ||| |||||||||||  |||| ||||| |||||    
T  33017306 aaattggcaccagagagaatcgaacctgagaccttgaggaggagcacacttccaggttccaagccaata 33017238  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 7949436 - 7949506
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaata 273  Q
    |||||||| |||| ||||||||  ||||||||||||| ||| ||||||||||  ||||||||||| |||||    
T  7949436 ctaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaata 7949506  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 4249269 - 4249220
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacact 254  Q
    |||||| |||| |||||||| |||||||||||||| ||| ||||||||||    
T  4249269 aaattggcaccagagagaatcaaacctgagaccttgaggaggagcacact 4249220  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 5795393 - 5795474
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaac 286  Q
    |||||| ||| || |||||| |||||||||||||| ||| |||||| |||   |||| ||||||||| | ||||||||||||    
T  5795393 aaattggcactggggagaatcaaacctgagaccttgaggaggagcatactccaaggtgccaagtcaacaccaccagaccaac 5795474  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 37109335 - 37109416
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaac 286  Q
    |||||| |||| ||||||||  ||||||||||||| ||| ||||||||||   |||||||||| ||||| ||| || |||||    
T  37109335 aaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaac 37109416  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 23378036 - 23377976
Alignment:
Q  217 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacac 277  Q
    ||||||||  ||||||||||||| ||| ||||||||||   |||||||||| |||||||||    
T  23378036 gagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataacac 23377976  T

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Target: scaffold0517 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 7710 - 7791
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaac 286  Q
    |||||| ||||||| |||||  ||| ||||||||| ||| |||||||||||  ||||| |||| ||||| ||||||||||||    
T  7710 aaattggcaccggatagaatcgaacttgagaccttaaggaggagcacactttcaggtctcaagccaataccaccagaccaac 7791  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 12234488 - 12234572
Alignment:
Q  202 tctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaac 286  Q
    ||||||||| ||| |||||||||  ||||||||||||  ||  ||||||||||   |||||||||||||||| |||||| |||||    
T  12234488 tctaaattgacactggagagaatcgaacctgagacctcgagagggagcacactcccaggtcccaagtcaataccaccaggccaac 12234572  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 33549198 - 33549115
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaac 286  Q
    |||||||| || | ||||||||  ||||||||||||  ||| ||||||||||   |||||||||| ||||| ||||||||||||    
T  33549198 ctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaac 33549115  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 6385947 - 6385881
Alignment:
Q  212 caccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacacc 278  Q
    |||||||||||||  ||||||||||||| ||| |||||||| |   |||||||||||||||| ||||    
T  6385947 caccggagagaatcgaacctgagaccttaaggaggagcacagtcccaggtcccaagtcaataccacc 6385881  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 31622975 - 31623056
Alignment:
Q  205 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaac 286  Q
    |||||| |||||||| || | |||||||||||||  ||| ||||||||||   |||||||||| ||||| |||| |||||||    
T  31622975 aaattgacaccggagtgattcaaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccggaccaac 31623056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 28841509 - 28841457
Alignment:
Q  202 tctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacact 254  Q
    ||||||||| |||||||||||||  ||| ||||||||| ||| ||||||||||    
T  28841509 tctaaattgacaccggagagaatcgaacttgagaccttgaggaggagcacact 28841457  T

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Target: scaffold0258 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 15305 - 15388
Alignment:
Q  203 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataacaccagaccaac 286  Q
    |||||||| || | ||||||||  ||||||||||||  ||| ||||||||||   |||||||||| ||||| ||||||||||||    
T  15305 ctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaac 15388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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