View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0760_low_44 (Length: 292)
Name: NF0760_low_44
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0760_low_44 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 6314884 - 6315175
Alignment:
| Q |
1 |
agcacacaagtggattgcaaaaagggacagaagtcactctttcccttcctacacacagcacctcctaaggcatatcttctttgaatggcaagaaactaca |
100 |
Q |
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| T |
6314884 |
agcacacaagtggattgcaaaaagggccagaagtcactctttcccttcctacacacagcacctcctaaggcatatcttctttgaatggcaagagactaca |
6314983 |
T |
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| Q |
101 |
acagcttaggggaatagtgacctatgacctcaaattcaaacgcatgcaggggacattttcatcatgtgcagagtttatttttactgtcatcaacaactgc |
200 |
Q |
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| T |
6314984 |
acagcttaggggaatagtaacctatgacctcaaattcaaacgcatgcaggggacattttcatcatgtgcagaatttatttttactgtcatcaacaactgc |
6315083 |
T |
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| Q |
201 |
acaacaatgattatgaatggtttaactatggtgttgtggaatatatggaagagaagaagtaagcagctttggaatatgcctggcaacaatcc |
292 |
Q |
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| T |
6315084 |
acaacaatgattatgaatggtttaactatggtgttgtggaatatatggaagagaagaagtaagcagctttggaatatgcctggcaacaatcc |
6315175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 71 - 221
Target Start/End: Original strand, 6318086 - 6318236
Alignment:
| Q |
71 |
catatcttctttgaatggcaagaaactacaacagcttaggggaatagtgacctatgacctcaaattcaaacgcatgcaggggacattttcatcatgtgca |
170 |
Q |
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| T |
6318086 |
catatcttgtttgaatgccaagaggctataaaagtttgggagtatagtgaaatatgaccttaaattcaaacgtatgtaggt--cagtttcatcatgtgga |
6318183 |
T |
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| Q |
171 |
gag--tttatttttactgtcatcaacaactgcacaacaatgattatgaatggt |
221 |
Q |
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| T |
6318184 |
gagaatttaattttactgtcatcaacagctgcacaacaaggattatgaatggt |
6318236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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