View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0760_low_46 (Length: 287)
Name: NF0760_low_46
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0760_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 5374516 - 5374258
Alignment:
| Q |
1 |
ttgttgtctagagtgaggtaaaagagtgtttgtttttggcaaaccaaggaactgtggtgttcttgttgtgtgaagttggtatctgagttcaggtataaca |
100 |
Q |
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| T |
5374516 |
ttgttgtctagagtgaggtaaaagagtgtttgtttttggcaaaccaaggaactgtggtgttcttgttgtgtgaagttggtatctgagttcaggtataaca |
5374417 |
T |
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| Q |
101 |
tcgagaattccgggctgttttgaaagtgtttcggcttcttggttagttagtcttgtggagtatccatgagctatgtgtttgtatgtgtatagaatctctg |
200 |
Q |
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| T |
5374416 |
tcgagaattccgggctgttttgaaagtgtttcggcttcttggttagttagtcttgtggagtatccatgagctatgtgtttgtatgtgtatagaatctctg |
5374317 |
T |
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| Q |
201 |
ctgtttctgatactgattttagcgatgtatcgaaccagttaaggtgatcagtgaatgtt |
259 |
Q |
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| T |
5374316 |
ctgtttctgatactgattttagcgatgtatcgaaccagttaaggtgatcagtgaatgtt |
5374258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 47368074 - 47368284
Alignment:
| Q |
17 |
ggtaaaagagtgtttgtttttggcaaaccaaggaactgtggtgttcttgttgtgtgaagttggtatctgagttcaggtataacatcgagaattccgggct |
116 |
Q |
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| T |
47368074 |
ggtaaaagagtgattgttttctccaatccgaggaactctggtgttcgagttgtgtgaagctcgtatctgacatcagggataaccgagagaattcccggtt |
47368173 |
T |
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| Q |
117 |
gttttgaaagtgtttcggcttcttggttagttagtcttgtggagtatccatgagctatgtgtttgtatgtgtatagaatctctgctgtttctgatactga |
216 |
Q |
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| T |
47368174 |
gctttgtgagtaagtctgcttcttgagtagttagccttgtggagaagccatgagctacatgtttgtaggtatacatcgtctctgcagtgtctgatactga |
47368273 |
T |
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| Q |
217 |
ttttagcgatg |
227 |
Q |
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|||||| |||| |
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| T |
47368274 |
ttttagtgatg |
47368284 |
T |
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