View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0760_low_48 (Length: 286)
Name: NF0760_low_48
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0760_low_48 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 37219266 - 37219547
Alignment:
| Q |
1 |
tataaacttgtttaagaaagaaatgtaactaacaactataaaaatttctcaaacaaaaactataaagattatgccaattttaactgtatatgtaaacact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37219266 |
tataaacttgtttaagaaagaaatgtaactaacaactatataaatttctcaaacaaaaactataa-gattatgccaattttaactgtatatgtaaacact |
37219364 |
T |
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| Q |
101 |
tgaattagaagagtaaggatgttttgtcgcatatgtcatgtgagagtaaggcattaaagttttttgattagatataaaacgaccatactttctnnnnnnn |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37219365 |
tgaattagaagagtaaggatgttttgtcgcatatgtcatgtgagagtaaggcattaaagttttttgattagatataaaacgaccatactttct---aaaa |
37219461 |
T |
|
| Q |
201 |
nnnnncaaagaaaagaccaactgcatcatgtctctgtttcctaacagtagtgtggataagaatggtagggtctctgctcctccaca |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37219462 |
aaaaacaaagaaaagaccaactgcatcatgtctctgtttcctaacagtagtgtggataagaatggtagggtctctgctccttcaca |
37219547 |
T |
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