View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0760_low_49 (Length: 285)
Name: NF0760_low_49
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0760_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 6635883 - 6635711
Alignment:
| Q |
68 |
attcaaagaagcccctcaattctacaactcaccaaattgtgcctccatcactgagccagaagaagacaccgaacgtgacactgacacatatatctgctcc |
167 |
Q |
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| T |
6635883 |
attcaaagaagcccctcaattctacaactcaccaaattgtgcctccatcactgagccagaagaagacaccgaacatgacactggcacatatatctgctcc |
6635784 |
T |
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| Q |
168 |
gaggaagcagtccatgtggcaatgacattagacacgacatatatccgaggatccatggctgcaatcctctctg |
240 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6635783 |
gaggaagcagtccatgtggcaatgacattagacacaacatatatccgaggatccatggctgcaatcctctctg |
6635711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 52164667 - 52164610
Alignment:
| Q |
176 |
agtccatgtggcaatgacattagacacgacatatatccgaggatccatggctgcaatc |
233 |
Q |
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|||||| || ||||||||| | ||||| ||||||||||||||||||||||| |||||| |
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| T |
52164667 |
agtccaagtagcaatgacactcgacacaacatatatccgaggatccatggcagcaatc |
52164610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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