View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0760_low_56 (Length: 268)
Name: NF0760_low_56
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0760_low_56 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 21 - 252
Target Start/End: Complemental strand, 15554040 - 15553809
Alignment:
| Q |
21 |
acatcatcatcctcatccaacccttttcaacctacacaatgttcgtcatttgtgttagacaatttgtctcaacattgacatggtgaactcccctcactca |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15554040 |
acatcatcatcctcatccaacccttttcaacctacacaatgttcgtcatttgtgttagacaatttgtctcaacgttgacatggtgaactcccctcactca |
15553941 |
T |
|
| Q |
121 |
acctgaactaaacctacaaacaacctctgaaacatttcttgacattgttgtttcagaaatccaacaacaacctttacctgcactacaaatagcctcttaa |
220 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15553940 |
acctgaattaaacctacaaacaacctctgaaacatttcttgacattgttgtttcagaaatccaacaacaacctttacatgcactacaaatagcctcttaa |
15553841 |
T |
|
| Q |
221 |
attataatttgttacaataatattgatgatgt |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
15553840 |
attataatttgttacaataatattgatgatgt |
15553809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 15649638 - 15649415
Alignment:
| Q |
29 |
atcctcatccaacccttttcaacctacacaatgttcgtcatttgtgttagacaatttgtctcaacattgacatggtgaactcccctcactcaacctgaac |
128 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||| |||||||||| ||||||||| |
|
|
| T |
15649638 |
atcctcatccaaccctttccaacctacacaatgttcgtcatttgtgttagaaaatttgtctcaagatttacatggtgaaatcccctcacttaacctgaac |
15649539 |
T |
|
| Q |
129 |
taaacctacaaacaacctctgaaacatttcttgacattgttgtttcagaaatccaacaacaacctttacctgcactacaaatagcctcttaaattataat |
228 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
15649538 |
taaacctacaaacaacctcttaaacatttcctaacattgttgtttcagaaatccaacaacaacctttacctgcactacaaatagcctctttaactataat |
15649439 |
T |
|
| Q |
229 |
ttgttacaataatattgatgatgt |
252 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
15649438 |
tcgttacaataatattgatgatgt |
15649415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4520 times since January 2019
Visitors: 4835