View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0760_low_58 (Length: 260)
Name: NF0760_low_58
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0760_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 37219190 - 37218952
Alignment:
| Q |
1 |
ttattaattcaattctaatcctaggttggcaagaaaattatcgcaagagttagcttctctgtaaatatacttcaacgagacattccaataaaaaatatgg |
100 |
Q |
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| T |
37219190 |
ttattaattcaattctaatcctaggttggcaagaaaattatcccaagagttagcttctctgtaaatatacttcaacgagacattccaataaaaaatatgg |
37219091 |
T |
|
| Q |
101 |
ataagacaaacaatgtcgaatatgatattataatcaatgtactattttcatttggtcttcctagccttagtgaactgtatatagccttaattaaagaaca |
200 |
Q |
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| T |
37219090 |
ataagacaaacaatgtcgagtatgatattataatcaatgtactattctcatttggtcttcctagccttagtgaactatatatagccttaattaaagaaca |
37218991 |
T |
|
| Q |
201 |
ttgtacaatttaatactttttaattaaattatgatgatg |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
37218990 |
ttgtacaatttaatactttttaattaaattatgatgatg |
37218952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 6411940 - 6412011
Alignment:
| Q |
44 |
caagagttagcttctctgtaaatatacttcaacgagacattccaataaaaaatatggataagacaaacaatg |
115 |
Q |
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||||||||| |||| ||||||||||||| ||||||||||| |||| ||||| |||||||||| ||| |||| |
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| T |
6411940 |
caagagttaacttccttgtaaatatactttaacgagacatttcaattaaaaagatggataagataaagaatg |
6412011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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