View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0760_low_59 (Length: 258)

Name: NF0760_low_59
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0760_low_59
NF0760_low_59
[»] chr5 (6 HSPs)
chr5 (37-258)||(1130753-1130974)
chr5 (166-235)||(3735578-3735648)
chr5 (174-256)||(35445975-35446059)
chr5 (166-231)||(7319102-7319168)
chr5 (150-212)||(26005349-26005411)
chr5 (173-248)||(10639873-10639949)
[»] chr2 (15 HSPs)
chr2 (106-243)||(22971597-22971734)
chr2 (40-121)||(22971748-22971829)
chr2 (137-258)||(41241196-41241318)
chr2 (166-257)||(42659216-42659308)
chr2 (139-248)||(31561827-31561937)
chr2 (166-257)||(12464538-12464630)
chr2 (166-243)||(41407214-41407292)
chr2 (135-248)||(42868535-42868649)
chr2 (197-257)||(5133716-5133777)
chr2 (171-212)||(11863849-11863890)
chr2 (150-234)||(32592484-32592569)
chr2 (215-256)||(44439426-44439467)
chr2 (197-248)||(3102637-3102689)
chr2 (175-234)||(15305579-15305639)
chr2 (180-243)||(15757738-15757802)
[»] chr8 (11 HSPs)
chr8 (170-257)||(1058139-1058227)
chr8 (171-234)||(12976131-12976195)
chr8 (174-243)||(4526337-4526405)
chr8 (166-258)||(10758320-10758413)
chr8 (188-243)||(35534690-35534745)
chr8 (197-258)||(16210950-16211012)
chr8 (166-243)||(42043424-42043502)
chr8 (185-257)||(12497296-12497369)
chr8 (137-193)||(8216774-8216830)
chr8 (171-258)||(29205726-29205814)
chr8 (166-214)||(38750271-38750319)
[»] chr3 (13 HSPs)
chr3 (166-258)||(30956690-30956783)
chr3 (166-258)||(30972502-30972595)
chr3 (160-234)||(46778315-46778390)
chr3 (165-218)||(19983692-19983745)
chr3 (166-234)||(35959544-35959613)
chr3 (172-243)||(583965-584037)
chr3 (174-253)||(3845631-3845711)
chr3 (171-258)||(24684887-24684975)
chr3 (197-258)||(44061087-44061149)
chr3 (166-234)||(466115-466184)
chr3 (166-258)||(53789525-53789618)
chr3 (194-242)||(26492896-26492944)
chr3 (197-256)||(38462225-38462285)
[»] chr4 (4 HSPs)
chr4 (166-258)||(22030117-22030209)
chr4 (166-248)||(41336674-41336756)
chr4 (166-258)||(50681153-50681246)
chr4 (171-246)||(43505874-43505950)
[»] chr6 (5 HSPs)
chr6 (141-258)||(6909936-6910055)
chr6 (180-258)||(24626222-24626301)
chr6 (163-208)||(35071205-35071250)
chr6 (197-241)||(24332887-24332931)
chr6 (197-256)||(29274295-29274355)
[»] chr7 (5 HSPs)
chr7 (171-229)||(4970881-4970940)
chr7 (171-258)||(46078065-46078155)
chr7 (146-194)||(32714325-32714373)
chr7 (160-218)||(9210535-9210593)
chr7 (195-258)||(21853180-21853244)
[»] chr1 (11 HSPs)
chr1 (166-235)||(30191904-30191974)
chr1 (171-243)||(14331707-14331780)
chr1 (135-208)||(18556809-18556882)
chr1 (166-218)||(2295017-2295069)
chr1 (166-257)||(24915116-24915208)
chr1 (166-256)||(14576719-14576810)
chr1 (135-194)||(15784227-15784286)
chr1 (166-234)||(37473312-37473381)
chr1 (171-258)||(27976513-27976601)
chr1 (173-248)||(37517268-37517344)
chr1 (190-257)||(47432033-47432101)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 37 - 258
Target Start/End: Original strand, 1130753 - 1130974
Alignment:
Q  37 tacgattaacttattgatttaaccatcaaatttatagaaattcttcaatcttttgtcaggtacctatagaagctacctaataactgattatgatagcttg 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1130753 tacgattaacttattgatttaaccatcaaatttatagaaattcttcaatcttttgtcaggtacctatagaagctacctaataactgattatggtagcttg 1130852  T
Q  137 tttggataaacaacttataacaaaaacatttattatgataagcgcttgtgtataagcttatataagctatttctatagaaaatataaaataaagttaatc 236  Q
    ||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1130853 ttttgataaacaacttatagcacaaacatttattatgataagcgcttgtgtataagcttatataagccatttctatagaaaatataaaataaagttaatc 1130952  T
Q  237 tgtttttatataggctataagt 258  Q
    ||||||||||||||||||||||    
T  1130953 tgtttttatataggctataagt 1130974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 3735648 - 3735578
Alignment:
Q  166 ttattatgataagcgcttgtgtataagcttatataagctatttctatag-aaaatataaaataaagttaat 235  Q
    |||| ||||||||||||| || ||||||||| ||||||||||||||||| |||| || |||||||||||||    
T  3735648 ttatcatgataagcgcttatggataagcttacataagctatttctatagcaaaagatgaaataaagttaat 3735578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 256
Target Start/End: Original strand, 35445975 - 35446059
Alignment:
Q  174 ataagcgcttgtgtataa-gcttatataagctatttctatagaaaat-ataaaataaagttaatctgtttttatataggctataa 256  Q
    |||||||||  ||||||| ||||| ||||||||||| ||||| |||| |||||||||||||||  ||||||| |||| |||||||    
T  35445975 ataagcgctaatgtataaagcttacataagctatttttatagcaaatgataaaataaagttaaattgtttttgtatacgctataa 35446059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 7319168 - 7319102
Alignment:
Q  166 ttattatgataagcgcttgtgtataagcttatataagctatttctatag-aaaatataaaataaagt 231  Q
    |||| ||||||||| ||| || ||||||||| ||||||||||||||  | |||||||||||||||||    
T  7319168 ttatcatgataagcacttatgcataagcttacataagctatttctaacgcaaaatataaaataaagt 7319102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 26005411 - 26005349
Alignment:
Q  150 cttataacaaaaacatttattatgataagcgcttgtgtataagcttatataagctatttctat 212  Q
    |||||| || ||||| ||||||||||||  |||| |||||||||||  |||||||||||||||    
T  26005411 cttatagcacaaacacttattatgataattgcttatgtataagcttgcataagctatttctat 26005349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 10639873 - 10639949
Alignment:
Q  173 gataagcgcttgtgtataagcttatataagctatttctatag-aaaatataaaataaagttaatctgtttttatata 248  Q
    ||||||| ||| ||||||||  |||||||||||||||||||| |||| ||||||| || ||||  ||||||| ||||    
T  10639873 gataagcacttatgtataagtctatataagctatttctatagcaaaagataaaattaaattaaattgtttttgtata 10639949  T

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Target: chr2 (Bit Score: 114; Significance: 7e-58; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 106 - 243
Target Start/End: Complemental strand, 22971734 - 22971597
Alignment:
Q  106 aagctacctaataactgattatgatagcttgtttggataaacaacttataacaaaaacatttattatgataagcgcttgtgtataagcttatataagcta 205  Q
    ||||| ||||||||||||||| | |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  22971734 aagctccctaataactgattacggtagcttgtttggataaacaacttatagcacaaacatttattatgataagcgcttgtgtataagcttatataagcta 22971635  T
Q  206 tttctatagaaaatataaaataaagttaatctgttttt 243  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  22971634 tttctatagaaaagataaaataaagttaatctgttttt 22971597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 22971829 - 22971748
Alignment:
Q  40 gattaacttattgatttaaccatcaaatttatagaaattcttcaatcttttgtcaggtacctatagaagctacctaataact 121  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||    
T  22971829 gattaacttattgatttaaccatcaaatttatagaaattcttcgatcttttgtcaggtacctatagaagctttctaataact 22971748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 41241318 - 41241196
Alignment:
Q  137 tttggataaacaacttataacaaaaacatttattatgataagcgcttgtgtataagcttatataagctatttctata-gaaaatataaaataaagttaat 235  Q
    |||| |||||||||||||| || || || |||| |||||| |||||| || ||||||||| |||||||||||||||| ||||| ||||||| |||||||     
T  41241318 tttgaataaacaacttatagcacaagcacttatcatgatatgcgcttatggataagcttacataagctatttctataggaaaagataaaatgaagttaaa 41241219  T
Q  236 ctgtttttatataggctataagt 258  Q
     ||||||| |||| |||||||||    
T  41241218 ttgtttttgtatatgctataagt 41241196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 42659308 - 42659216
Alignment:
Q  166 ttattatgataagcgcttgtgtataagcttatataagctatttctatagaaaat-ataaaataaagttaatctgtttttatataggctataag 257  Q
    |||| ||||||||||||| |||||||||||| ||||||||||| ||| ||||||  ||||||||||| ||  ||||||| |||| ||||||||    
T  42659308 ttatcatgataagcgcttatgtataagcttacataagctatttttatggaaaatggtaaaataaagtgaaattgtttttgtatatgctataag 42659216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 248
Target Start/End: Complemental strand, 31561937 - 31561827
Alignment:
Q  139 tggataaacaacttataacaaaaacatttattatgataagcgcttgtgtataagcttatataagctatttctatagaaaat-ataaaataaagttaatct 237  Q
    |||||||||| |||||| || || | ||||| |||||||||||||   |||||||||| ||||||||| ||||||  |||| |||||||||||||||  |    
T  31561937 tggataaacagcttatagcacaagcgtttatcatgataagcgcttacatataagcttacataagctatatctataataaatgataaaataaagttaaatt 31561838  T
Q  238 gtttttatata 248  Q
    |||||| ||||    
T  31561837 gtttttttata 31561827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 12464630 - 12464538
Alignment:
Q  166 ttattatgataagcgcttgtgtataagcttatataagctatttctatag-aaaatataaaataaagttaatctgtttttatataggctataag 257  Q
    |||| |||||||| || | |||| ||||||| ||||||||||||| ||| |||| |||||||||||||||  ||||||| |||| ||||||||    
T  12464630 ttatcatgataagtgcatatgtagaagcttacataagctatttctgtagaaaaagataaaataaagttaaattgtttttgtatatgctataag 12464538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 41407214 - 41407292
Alignment:
Q  166 ttattatgataagcgcttgtgtataagcttatataagctatttctata-gaaaatataaaataaagttaatctgttttt 243  Q
    |||| ||||||||| ||| |||||||||||| ||||||||||||| ||  |||| |||||||||||||||  |||||||    
T  41407214 ttatcatgataagcacttatgtataagcttacataagctatttctgtaccaaaagataaaataaagttaaattgttttt 41407292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 248
Target Start/End: Complemental strand, 42868649 - 42868535
Alignment:
Q  135 tgtttggataaacaacttataacaaaaacatttattatgataagcgcttgtgtataagcttatataagctatttctatag-aaaatataaaataaagtta 233  Q
    |||||||| |||||||||||| || || |  |||| |||||| |||||| || ||||| ||| |||||||||||  |||| |||| ||||||||||||||    
T  42868649 tgtttggacaaacaacttatagcacaagcgcttatcatgataggcgcttatgcataagtttacataagctattttcatagaaaaagataaaataaagtta 42868550  T
Q  234 atctgtttttatata 248  Q
    |  ||||||| ||||    
T  42868549 aattgtttttgtata 42868535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 5133716 - 5133777
Alignment:
Q  197 tataagctatttctatag-aaaatataaaataaagttaatctgtttttatataggctataag 257  Q
    |||||||||||||||||  |||| ||||||||||| ||| ||||||||||||| | ||||||    
T  5133716 tataagctatttctataacaaaagataaaataaagataaactgtttttatataagatataag 5133777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 11863849 - 11863890
Alignment:
Q  171 atgataagcgcttgtgtataagcttatataagctatttctat 212  Q
    ||||||||||||| || ||||||||| |||||||||||||||    
T  11863849 atgataagcgcttatgcataagcttacataagctatttctat 11863890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 32592484 - 32592569
Alignment:
Q  150 cttataacaaaaacatttattatgataagcgcttgtgtataagcttatataagctatttctatag-aaaatataaaataaagttaa 234  Q
    |||||| || ||||| |||| || |||||||||| |||||||||||  |||| |||||| ||||| |||| ||||||||| |||||    
T  32592484 cttatagcacaaacacttatcattataagcgcttatgtataagcttgcataaactatttttatagaaaaagataaaataatgttaa 32592569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 44439467 - 44439426
Alignment:
Q  215 aaaatataaaataaagttaatctgtttttatataggctataa 256  Q
    |||||||||||||||||||| |||||||| |||| |||||||    
T  44439467 aaaatataaaataaagttaaactgtttttgtataagctataa 44439426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 3102637 - 3102689
Alignment:
Q  197 tataagctatttctatag-aaaatataaaataaagttaatctgtttttatata 248  Q
    |||||||||||| ||||| ||||||||||||||||| || || ||||||||||    
T  3102637 tataagctatttttatagcaaaatataaaataaagtcaaactatttttatata 3102689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 15305579 - 15305639
Alignment:
Q  175 taagcgcttgtgtataagcttatataagctatttctatagaaaat-ataaaataaagttaa 234  Q
    |||| ||||||||||||||||  ||||||||||| ||||| |||| ||||||||| |||||    
T  15305579 taagtgcttgtgtataagcttgcataagctatttttatagcaaatgataaaataatgttaa 15305639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 15757802 - 15757738
Alignment:
Q  180 gcttgtgtataagcttatataagctatttctatagaaaat-ataaaataaagttaatctgttttt 243  Q
    |||| |||||||||| | ||||||||| |||| ||||||| |||||||||||||||  |||||||    
T  15757802 gcttatgtataagctcacataagctatatctaaagaaaatgataaaataaagttaaattgttttt 15757738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 170 - 257
Target Start/End: Complemental strand, 1058227 - 1058139
Alignment:
Q  170 tatgataagcgcttgtgtataagcttatataagctatttctatagaaaat-ataaaataaagttaatctgtttttatataggctataag 257  Q
    |||||||||||||| |||||||||||| ||||||||||| ||||| |||| |||||||||||||||||||||||| |||| ||||||||    
T  1058227 tatgataagcgcttatgtataagcttacataagctatttttatagcaaatcataaaataaagttaatctgtttttgtatatgctataag 1058139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 12976131 - 12976195
Alignment:
Q  171 atgataagcgcttgtgtataagcttatataagctatttctatag-aaaatataaaataaagttaa 234  Q
    ||||||||||||| |||||||||| | ||||||||||||||||| ||||||||||||||||||||    
T  12976131 atgataagcgcttatgtataagctcacataagctatttctatagcaaaatataaaataaagttaa 12976195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 4526405 - 4526337
Alignment:
Q  174 ataagcgcttgtgtataagcttatataagctatttctatagaaaatataaaataaagttaatctgttttt 243  Q
    ||||||||||||||||| ||||| |||| |||||||||||| ||| |||||||||||||||  |||||||    
T  4526405 ataagcgcttgtgtataggcttacataaactatttctatagcaaa-ataaaataaagttaaattgttttt 4526337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 10758413 - 10758320
Alignment:
Q  166 ttattatgataagcgcttgtgtataagcttatataagctatttctatagaaaat-ataaaataaagttaatctgtttttatataggctataagt 258  Q
    |||| |||||||| | || |||||||||| |  ||| |||||||||||| |||| |||||||||||||||  ||||||| |||| |||||||||    
T  10758413 ttatcatgataagtgattatgtataagctcacgtaaactatttctatagcaaatcataaaataaagttaaattgtttttgtatatgctataagt 10758320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 35534745 - 35534690
Alignment:
Q  188 ataagcttatataagctatttctatagaaaatataaaataaagttaatctgttttt 243  Q
    ||||||||| ||||| ||||| ||||||||| |||||||||||||||  |||||||    
T  35534745 ataagcttacataagatatttttatagaaaagataaaataaagttaaattgttttt 35534690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 16211012 - 16210950
Alignment:
Q  197 tataagctatttctatagaaaat-ataaaataaagttaatctgtttttatataggctataagt 258  Q
    |||||||||||||||||| |||| ||||||||||||||   |||||| ||||| |||||||||    
T  16211012 tataagctatttctatagtaaatgataaaataaagttacattgttttcatataagctataagt 16210950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 42043502 - 42043424
Alignment:
Q  166 ttattatgataagcgcttgtgtataagcttatataagctatttctatag-aaaatataaaataaagttaatctgttttt 243  Q
    |||||| ||||||| ||| |||||||||||| ||| ||||||||||||| |||| |||||||  ||||||  |||||||    
T  42043502 ttattacgataagcacttatgtataagcttacatatgctatttctatagcaaaagataaaatgcagttaaattgttttt 42043424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 12497369 - 12497296
Alignment:
Q  185 tgtataagcttatataagctatttctatag-aaaatataaaataaagttaatctgtttttatataggctataag 257  Q
    |||||||||||  |||||| |||| ||||| |||| |||||||||||||||  ||||||| |||| ||||||||    
T  12497369 tgtataagcttgcataagccatttttatagcaaaagataaaataaagttaacttgtttttgtatatgctataag 12497296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 8216774 - 8216830
Alignment:
Q  137 tttggataaacaacttataacaaaaacatttattatgataagcgcttgtgtataagc 193  Q
    ||||||||||||||||||| || ||||| |||| ||||||| | ||| |||||||||    
T  8216774 tttggataaacaacttatagcataaacacttatcatgataaacacttatgtataagc 8216830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 29205726 - 29205814
Alignment:
Q  171 atgataagcgcttgtgtataagcttatataagctatttctatag-aaaatataaaataaagttaatctgtttttatataggctataagt 258  Q
    |||||| |||||  |||||| | |||| ||| |||||||||||| |||| ||||||| |||||||  ||||||| |||| |||||||||    
T  29205726 atgatatgcgctgttgtatatgattatgtaaactatttctatagaaaaagataaaatgaagttaaattgtttttgtatatgctataagt 29205814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 38750271 - 38750319
Alignment:
Q  166 ttattatgataagcgcttgtgtataagcttatataagctatttctatag 214  Q
    |||| ||||||||||||| |||||||||||  ||||||||||| |||||    
T  38750271 ttatcatgataagcgcttatgtataagcttgcataagctatttttatag 38750319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 30956783 - 30956690
Alignment:
Q  166 ttattatgataagcgcttgtgtataagcttatataagctatttctatag-aaaatataaaataaagttaatctgtttttatataggctataagt 258  Q
    |||| |||||||||  || || ||||||||| ||||||||||||||||| |||| |||||||||||||||  ||||||| ||||||||||||||    
T  30956783 ttatcatgataagcatttatgcataagcttacataagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagt 30956690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 30972595 - 30972502
Alignment:
Q  166 ttattatgataagcgcttgtgtataagcttatataagctatttctatag-aaaatataaaataaagttaatctgtttttatataggctataagt 258  Q
    |||| |||||||||  || || ||||||||| ||||||||||||||||| |||| |||||||||||||||  ||||||| ||||||||||||||    
T  30972595 ttatcatgataagcatttatgcataagcttacataagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagt 30972502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 46778390 - 46778315
Alignment:
Q  160 aaacatttattatgataagcgcttgtgtataagcttatataagctatttctatag-aaaatataaaataaagttaa 234  Q
    ||||| |||| ||||||||||||| ||||| |||||||||||||||||||||||| || | |||||||||||||||    
T  46778390 aaacacttatcatgataagcgcttatgtatcagcttatataagctatttctatagcaagagataaaataaagttaa 46778315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 19983692 - 19983745
Alignment:
Q  165 tttattatgataagcgcttgtgtataagcttatataagctatttctatagaaaa 218  Q
    |||||||||||||||| || |||||||||||| ||||| |||||||||||||||    
T  19983692 tttattatgataagcgtttatgtataagcttacataagttatttctatagaaaa 19983745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 35959613 - 35959544
Alignment:
Q  166 ttattatgataagcgcttgtgtataagcttatataagctatttctatagaaaa-tataaaataaagttaa 234  Q
    |||| |||||||| |||| |||||||||| | |||||||||||||||||||||  |||||||||||||||    
T  35959613 ttatcatgataagagcttatgtataagctcacataagctatttctatagaaaaggataaaataaagttaa 35959544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 583965 - 584037
Alignment:
Q  172 tgataagcgcttgtgtataagcttatataagctatttctatagaaaat-ataaaataaagttaatctgttttt 243  Q
    ||||||| ||||  ||||||||||| ||||| |||||||||||||||| |||||||||||||||  |||||||    
T  583965 tgataagtgcttacgtataagcttacataagttatttctatagaaaatgataaaataaagttaaattgttttt 584037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 3845711 - 3845631
Alignment:
Q  174 ataagcgcttgtgtataagcttatataagctatttctataga-aaatataaaataaagttaatctgtttttatataggcta 253  Q
    ||||| |||| |||||||||||| |||||||||||||||||| ||| ||||||| ||||| |  ||||||| |||| ||||    
T  3845711 ataagtgcttttgtataagcttacataagctatttctatagagaaagataaaattaagttgaaatgtttttctatatgcta 3845631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 24684975 - 24684887
Alignment:
Q  171 atgataagcgcttgtgtataagcttatataagctatttctatag-aaaatataaaataaagttaatctgtttttatataggctataagt 258  Q
    ||||||||||||| || ||||| ||| ||||||||||| ||||| |||| |||||||||| || |  ||||||| |||| |||||||||    
T  24684975 atgataagcgcttttgcataagtttacataagctatttttatagaaaaagataaaataaattttaattgtttttgtatatgctataagt 24684887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 44061149 - 44061087
Alignment:
Q  197 tataagctatttctatag-aaaatataaaataaagttaatctgtttttatataggctataagt 258  Q
    |||||||||||||||||| |||| ||||||||| |||||  ||||||| |||| |||||||||    
T  44061149 tataagctatttctatagcaaaagataaaataaggttaaattgtttttctataagctataagt 44061087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 466115 - 466184
Alignment:
Q  166 ttattatgataagcgcttgtgtataagcttatataagctatttctatag-aaaatataaaataaagttaa 234  Q
    |||||||||||||| ||| || ||||||||| |||| ||||||||  || ||||| ||||||||||||||    
T  466115 ttattatgataagctcttatgcataagcttacataatctatttcttaagcaaaatgtaaaataaagttaa 466184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 53789618 - 53789525
Alignment:
Q  166 ttattatgataagcgcttgtgtataagcttatataagctatttctata-gaaaatataaaataaagttaatctgtttttatataggctataagt 258  Q
    |||| ||||||||| ||| ||| |||||||| |||||||||||||||| ||||| || || |||| ||||  ||||||  |||| |||||||||    
T  53789618 ttatcatgataagcacttatgtgtaagcttacataagctatttctataggaaaagatgaactaaaattaaaatgttttggtatatgctataagt 53789525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 26492896 - 26492944
Alignment:
Q  194 ttatataagctatttctatagaaaatataaaataaagttaatctgtttt 242  Q
    |||||||| |||||||||||  |||||||||||||||| || |||||||    
T  26492896 ttatataaactatttctataccaaatataaaataaagtcaaactgtttt 26492944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 38462225 - 38462285
Alignment:
Q  197 tataagctatttctatag-aaaatataaaataaagttaatctgtttttatataggctataa 256  Q
    |||||||||||||||||  |||| |||||||||||| || ||||||| ||||| |||||||    
T  38462225 tataagctatttctataccaaaagataaaataaagtcaaactgttttcatatatgctataa 38462285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 258
Target Start/End: Original strand, 22030117 - 22030209
Alignment:
Q  166 ttattatgataagcgcttgtgtataagcttatataagctatttctatagaaaatataaaataaagttaatctgtttttatataggctataagt 258  Q
    |||| ||||||||||||| |||||||||| | ||||||||||||||||||||  ||||||||||||||   | ||||| |||| |||||||||    
T  22030117 ttatcatgataagcgcttatgtataagctcacataagctatttctatagaaaggataaaataaagttatattatttttgtatatgctataagt 22030209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 41336674 - 41336756
Alignment:
Q  166 ttattatgataagcgcttgtgtataagcttatataagctatttctatagaaaatataaaataaagttaatctgtttttatata 248  Q
    |||||||||||||| ||| |||||| ||||  ||||||||||| ||||| ||| |||||||||||||||  ||||||| ||||    
T  41336674 ttattatgataagcacttatgtataggcttgcataagctatttttatagcaaagataaaataaagttaaattgtttttgtata 41336756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 50681246 - 50681153
Alignment:
Q  166 ttattatgataagcgcttgtgtataagcttatataagctatttctata-gaaaatataaaataaagttaatctgtttttatataggctataagt 258  Q
    |||| |||||||||| || |||||||||||| | ||||||||| |||| || || ||||||||| |||||  ||||||| |||| |||||||||    
T  50681246 ttatcatgataagcgtttatgtataagcttacaaaagctatttttataggataagataaaataatgttaaattgtttttgtatatgctataagt 50681153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 43505874 - 43505950
Alignment:
Q  171 atgataagcgcttgtgtataagcttatataagctatttctatag-aaaatataaaataaagttaatctgtttttata 246  Q
    ||||||||| ||| |||||||||||  ||||||||||| ||||| |||| ||||||||| |||||  ||||||||||    
T  43505874 atgataagcacttatgtataagcttgcataagctatttttatagcaaaagataaaataacgttaaattgtttttata 43505950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 258
Target Start/End: Complemental strand, 6910055 - 6909936
Alignment:
Q  141 gataaacaacttataacaaaaacatttattatgataagcgcttgtgtataagcttatataagctatttctatag--aaaatataaaataaagttaatctg 238  Q
    ||||||||  ||||| || || || |||| |||||||| |||| ||||||| |||| |||||||||||||||||  |||  | |||||||||||||  ||    
T  6910055 gataaacagtttatatcacaagcacttatcatgataagtgcttatgtataaacttacataagctatttctataggaaaagaaaaaaataaagttaaattg 6909956  T
Q  239 tttttatataggctataagt 258  Q
    ||||| |||| |||||||||    
T  6909955 tttttgtatatgctataagt 6909936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 24626222 - 24626301
Alignment:
Q  180 gcttgtgtataagcttatataagctatttctata-gaaaatataaaataaagttaatctgtttttatataggctataagt 258  Q
    |||| |||||||||||| |||||||||||||||| ||||  |||||| ||||||||  ||||||| ||||  ||||||||    
T  24626222 gcttatgtataagcttacataagctatttctataggaaaggataaaacaaagttaaattgtttttgtatattctataagt 24626301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 35071250 - 35071205
Alignment:
Q  163 catttattatgataagcgcttgtgtataagcttatataagctattt 208  Q
    ||||||| ||||||||||||||| |||||||||  |||||||||||    
T  35071250 catttataatgataagcgcttgtatataagcttgcataagctattt 35071205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 24332887 - 24332931
Alignment:
Q  197 tataagctatttctatagaaaatataaaataaagttaatctgttt 241  Q
    |||||||||||||| || |||| |||||||||||||||| |||||    
T  24332887 tataagctatttctttaaaaaagataaaataaagttaatttgttt 24332931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 29274355 - 29274295
Alignment:
Q  197 tataagctatttctatag-aaaatataaaataaagttaatctgtttttatataggctataa 256  Q
    |||||||||||||||||| |||| |||||||||||| ||  |||||| ||||| |||||||    
T  29274355 tataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctataa 29274295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 4970940 - 4970881
Alignment:
Q  171 atgataagcgcttgtgtataagcttatataagctatttctatag-aaaatataaaataaa 229  Q
    |||||||||| || |||||||||||| ||||||||||||||||| |||| ||||||||||    
T  4970940 atgataagcggttatgtataagcttacataagctatttctatagcaaaagataaaataaa 4970881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 46078065 - 46078155
Alignment:
Q  171 atgataagcgcttgtgtataagcttatataagctatttctatag-aaaatataaaataaagttaatctgtttt--tatataggctataagt 258  Q
    ||||||||||||| |||||||||||| ||||| ||||| ||||| |||| |||||| ||||||||  ||||||  |||||| |||||||||    
T  46078065 atgataagcgcttatgtataagcttacataagttatttttatagaaaaagataaaacaaagttaaattgtttttgtatatatgctataagt 46078155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 32714325 - 32714373
Alignment:
Q  146 acaacttataacaaaaacatttattatgataagcgcttgtgtataagct 194  Q
    ||||||||||| | |||||||||| ||||||||||||| ||||||||||    
T  32714325 acaacttataatataaacatttatcatgataagcgcttatgtataagct 32714373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 9210535 - 9210593
Alignment:
Q  160 aaacatttattatgataagcgcttgtgtataagcttatataagctatttctatagaaaa 218  Q
    |||||||||| ||||||| ||||| |||||||||||  |||||||| || |||||||||    
T  9210535 aaacatttatcatgataatcgcttatgtataagcttgcataagctacttttatagaaaa 9210593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 21853244 - 21853180
Alignment:
Q  195 tatataagctatttctat-agaaaatataaaataaagttaatctgtttttatataggctataagt 258  Q
    |||||||| ||||||||| | |||| |||||||||||||||  ||||| ||||||||| ||||||    
T  21853244 tatataagttatttctattacaaaagataaaataaagttaaattgtttgtatataggcgataagt 21853180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 30191904 - 30191974
Alignment:
Q  166 ttattatgataagcgcttgtgtataagcttatataagctatttctatag-aaaatataaaataaagttaat 235  Q
    |||||||||||||| ||||||||||||  ||  |||||||||| ||||| |||| ||||||||||||||||    
T  30191904 ttattatgataagcacttgtgtataagtatacctaagctatttttatagcaaaaaataaaataaagttaat 30191974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 14331707 - 14331780
Alignment:
Q  171 atgataagcgcttgtgtataagcttatataagctatttctatagaa-aatataaaataaagttaatctgttttt 243  Q
    ||||||||| ||| |||||||||| | |||||||||||||| |||| || |||||||||||||||  |||||||    
T  14331707 atgataagcacttatgtataagctaacataagctatttctacagaacaagataaaataaagttaaattgttttt 14331780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 18556809 - 18556882
Alignment:
Q  135 tgtttggataaacaacttataacaaaaacatttattatgataagcgcttgtgtataagcttatataagctattt 208  Q
    |||||||||||||| |||||| || || || ||||  |||  ||||||||||||||||||| ||||||||||||    
T  18556809 tgtttggataaacagcttatagcacaagcacttatcgtgacgagcgcttgtgtataagcttgtataagctattt 18556882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 2295017 - 2295069
Alignment:
Q  166 ttattatgataagcgcttgtgtataagcttatataagctatttctatagaaaa 218  Q
    |||| |||||||| |||| || ||||||||| |||||||||||||||||||||    
T  2295017 ttatcatgataagtgcttatgcataagcttacataagctatttctatagaaaa 2295069  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 24915208 - 24915116
Alignment:
Q  166 ttattatgataagcgcttgtgtataagcttatataagctatttctatagaa-aatataaaataaagttaatctgtttttatataggctataag 257  Q
    |||||||| |||| | ||||| ||| ||||| |||| |||||||||||| | || |||||||||||||||  ||||||| |||| ||||||||    
T  24915208 ttattatgttaagaggttgtgaataggcttacataaactatttctatagcagaagataaaataaagttaaattgtttttgtatatgctataag 24915116  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 14576810 - 14576719
Alignment:
Q  166 ttattatgataagcgcttgtgtataagcttatataagctatttctatagaaaat-ataaaataaagttaatctgtttttatataggctataa 256  Q
    |||| ||||||||| ||| | |||||||| || ||||||||||| |||| |||  |||||||||||||||  ||||||| |||| |||||||    
T  14576810 ttatcatgataagcacttatttataagctcatgtaagctatttccatagtaaaggataaaataaagttaaattgtttttgtatatgctataa 14576719  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 15784227 - 15784286
Alignment:
Q  135 tgtttggataaacaacttataacaaaaacatttattatgataagcgcttgtgtataagct 194  Q
    ||||||||||||||  ||||| || || || |||||||||||||||||| ||||||||||    
T  15784227 tgtttggataaacagtttatatcacaagcacttattatgataagcgcttatgtataagct 15784286  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 37473312 - 37473381
Alignment:
Q  166 ttattatgataagcgcttgtgtataagcttatataagctatttctatagaaaat-ataaaataaagttaa 234  Q
    |||| |||| |||| ||| |||||||||||| ||||||||||| ||||| |||| |||||| ||||||||    
T  37473312 ttatcatgacaagcacttatgtataagcttacataagctatttttatagcaaatgataaaacaaagttaa 37473381  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 27976513 - 27976601
Alignment:
Q  171 atgataagcgcttgtgtataagcttatataagctatttctatagaaaat-ataaaataaagttaatctgtttttatataggctataagt 258  Q
    ||||||||  ||| |||||||||||| ||||||||||| ||||| |||| ||  || ||||||||  ||||||| |||| |||||||||    
T  27976513 atgataagtccttatgtataagcttacataagctatttttatagcaaatgattgaacaaagttaaattgtttttgtatatgctataagt 27976601  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 37517344 - 37517268
Alignment:
Q  173 gataagcgcttgtgtataagcttatataagctatttctatag-aaaatataaaataaagttaatctgtttttatata 248  Q
    |||||||| || ||||||||||   ||||| ||||||||||  ||||||||||||||||||||  ||||||| ||||    
T  37517344 gataagcgtttatgtataagctcgcataagttatttctataccaaaatataaaataaagttaaattgtttttgtata 37517268  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 257
Target Start/End: Original strand, 47432033 - 47432101
Alignment:
Q  190 aagcttatataagctatttctatag-aaaatataaaataaagttaatctgtttttatataggctataag 257  Q
    ||||||| ||||||||||| ||||| |||| |||||||||||||||  |||||||  ||| ||||||||    
T  47432033 aagcttacataagctatttttatagaaaaagataaaataaagttaaattgtttttgaatatgctataag 47432101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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