View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0760_low_60 (Length: 258)
Name: NF0760_low_60
Description: NF0760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0760_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 15050271 - 15050503
Alignment:
| Q |
11 |
tatgaatcaatggaagctatgatggtaagcaaaaacagagttacatgagaatgaatatgagacctgattcaaagagacaagagcgtgaaaaagagaacga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15050271 |
tatgaatcaatggaagctatgatggtaagcaaaaacagagttacatgagaatgaatatgagacctgattcaaagagacaagagcgtgaaaaagagaacga |
15050370 |
T |
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| Q |
111 |
tgaccctatatcacaacaattgagattgaatttcaatcagattctttgattagcgggaaagaggagataattgcggcgggagtggtgaacgtgggttctt |
210 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
15050371 |
cgaccttatatcacaacaattgagattgaatgtcaatcagattctttgattagcggaaaagatgagataattgctgcgggagtggtgaacgtgggttctt |
15050470 |
T |
|
| Q |
211 |
ttc--tctgtttttgtttcggtgaacggtgggt |
241 |
Q |
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||| | ||||||||||| |||||||||||||| |
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| T |
15050471 |
ttctgtatgtttttgttttggtgaacggtgggt |
15050503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 15231084 - 15231171
Alignment:
| Q |
11 |
tatgaatcaatggaagctatgatggtaagcaaaaacagagttacatgagaatgaatatgagacctgattcaaagagacaagagcgtgaaaa |
101 |
Q |
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| T |
15231084 |
tatgaatcaatggaagctgtgattctaagcaagaacagagtt--gtgaggatgaatatgagacctgactcaca-aggcaagagcgtgaaaa |
15231171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 20789719 - 20789949
Alignment:
| Q |
11 |
tatgaatcaatggaagctatgatggtaagcaaaaacagagttacatgagaatgaatatgagacctgattcaaagagacaagagcgtgaaaaagagaacga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
20789719 |
tatgaatcaatggaagctatgatggtaagcaaaaacagagttacatgagaatgaatatgagacctgattcaaagagac--gagcgtgaaaaagagagcga |
20789816 |
T |
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| Q |
111 |
tgaccctatatcacaacaattgagattgaatttcaatcagattctttgattagcgggaaagaggagataattgcggcgggagtggtgaacgtgggttc-- |
208 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20789817 |
cgaccctatatcacaacaattgagattgaatgtcaatcagattctttgattagcggaaaagaggagataattgcagcgggagtggtgaacgtgggttctt |
20789916 |
T |
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| Q |
209 |
ttttctctgtttttgtttcggtgaacggtgggt |
241 |
Q |
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|||| | ||||||||||| |||||||||||||| |
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| T |
20789917 |
ttttgtatgtttttgttttggtgaacggtgggt |
20789949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 24187440 - 24187501
Alignment:
| Q |
11 |
tatgaatcaatggaagctatgatggtaagcaaaaacagagttacatgagaatgaatatgaga |
72 |
Q |
| |
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||||||||||||||||||||||| ||||||| ||||||||||| |||| |||||||||||| |
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| T |
24187440 |
tatgaatcaatggaagctatgatagtaagcagaaacagagttatgtgaggatgaatatgaga |
24187501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 204
Target Start/End: Original strand, 1183493 - 1183690
Alignment:
| Q |
11 |
tatgaatcaatggaagctatgatggtaagcaaaaacagagttacatgagaatgaatatgagacctgattcaaagagacaagagcgtgaaaaagagaa--- |
107 |
Q |
| |
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|||||||||||||||| | ||||| |||||| ||||||||||| |||| |||||||| | | |||||||| | || ||||||| |||||| ||||| |
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| T |
1183493 |
tatgaatcaatggaagttgtgatgataagcagaaacagagttatgtgaggatgaatataaaatctgattcaca-aggcaagagcatgaaaacgagaaatc |
1183591 |
T |
|
| Q |
108 |
--cgatgaccctatatcacaacaattgagattgaatttcaatcagattctttgattagcgggaaagaggagataattgcggcgggagtggtgaacgtgg |
204 |
Q |
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||| ||| |||| ||||||||| ||| |||||||||||||||| ||||||||| | ||||||||||| | ||||| |||||||||||| ||||||| |
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| T |
1183592 |
gacgacgacactatttcacaacaaatgaagttgaatttcaatcagagtctttgattcgtgggaaagaggaaacaattgtggcgggagtggttaacgtgg |
1183690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 54593376 - 54593450
Alignment:
| Q |
124 |
caacaattgagattgaatttcaatcagattctttgattagcgggaaagaggagataattgcggcgggagtggtgaa |
199 |
Q |
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| T |
54593376 |
caacaaatgtgattgaattcctatcagat-ctttgatttgcgggaaagaggaaatagttgtggcgggagtgatgaa |
54593450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 49959562 - 49959364
Alignment:
| Q |
11 |
tatgaatcaatggaagctatgatggtaagcaaaaacagagttacatgagaatgaatatgagacctgattcaaagagacaagagcgtgaaaaagagaa--c |
108 |
Q |
| |
|
|||||||||||||||| | ||||| |||||| ||||||||||| |||| ||| |||||| | |||||| | |||| ||||||| |||||| ||||| | |
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| T |
49959562 |
tatgaatcaatggaagttgtgatgataagcagaaacagagttatgtgaggatgcatatgaaatctgatttacagaggcaagagcatgaaaacgagaaatc |
49959463 |
T |
|
| Q |
109 |
gat---gaccctatatcacaacaattgagattgaatttcaatcagattctttgattagcgggaaagaggagataattgcggcgggagtggtgaacgtgg |
204 |
Q |
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||| ||| |||| |||||||||| || |||||| |||| |||| |||||| || | ||||||||||| | |||||||| || |||||| ||||||| |
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| T |
49959462 |
gatgacgacactatttcacaacaatagaagttgaatatcaaccagagtctttgtttcgtgggaaagaggaaacaattgcggtggaagtggttaacgtgg |
49959364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 413036 - 413097
Alignment:
| Q |
11 |
tatgaatcaatggaagctatgatggtaagcaaaaacagagttacatgagaatgaatatgaga |
72 |
Q |
| |
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||||||||||||||||||||||| ||||||| ||||||||||| |||| |||||||||||| |
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| T |
413036 |
tatgaatcaatggaagctatgatagtaagcagaaacagagttatgtgaggatgaatatgaga |
413097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 24342464 - 24342403
Alignment:
| Q |
11 |
tatgaatcaatggaagctatgatggtaagcaaaaacagagttacatgagaatgaatatgaga |
72 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||| |||| |||||||||||| |
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| T |
24342464 |
tatgaatcaatggaagctatgatagtaagcagaaacagagttatgtgaggatgaatatgaga |
24342403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 24354842 - 24354800
Alignment:
| Q |
11 |
tatgaatcaatggaagctatgatggtaagcaaaaacagagtta |
53 |
Q |
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| T |
24354842 |
tatgaatcaatggaagctatgatagtaagcagaaacatagtta |
24354800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 12102408 - 12102476
Alignment:
| Q |
11 |
tatgaatcaatggaagctatgatggtaagcaaaaacagagttacatgagaatgaatatgagacctgatt |
79 |
Q |
| |
|
|||||||||||||||||| ||||| || | | ||||||||||| |||| |||||| ||||||||||| |
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| T |
12102408 |
tatgaatcaatggaagctgtgatgataggaagaaacagagttatgtgaggatgaatcagagacctgatt |
12102476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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